result

Gene information

Detail information of g199889

Location

Gene	Chr	Start	End	Strand
g199889	Scaffold_50929:HRSCAF_434015	79347	83280	-

Sequences

CDS

Protein

Gene

>g199889.t1
ATGATGGTGAAAAATGAGAGGAATGAGGAAACAACGCCTTATGCACGCATGGTGAGCCAACAAGCGTCATCTAGACGTCAGTGTTGAAAAACAGACGTTTGTTGAACAAGCATTTGTTCAAATCTCCGTTTTGTATGGTTGCATTTTGTAATCCAATATCAAAGTGTAATTTTTAATCCCAAAATAGCTGGAGACACTTTAAGATTTACATATGATAAAACATCGAAAAAAGGTCGGTGATTGAATTTTGCATGCGCATGAAAATGTTATGAAAATTTATAGAATGTTAAATTGTACATAGGAATTTGATAAAAATACTAGAAATTTTAGCTAATTTATAGAATATATCAAAGAAAATTACGTGTATGTGTTATTGTTTTATATTTTGTCAACCAAAATGCATGAATACACAGTAGAAAAAATTGAAAATTTCAGTGCATGCACAAATAAAATTCTCTAATAGAAGTTCATTAATGCAAATAGTATCAGTGAGGCTGTCAATGAATGTTGATGATAAGAAATTAATTATTTTATCCACTTTTCATGTTTTTGTATAATAGCTAAATTTCACAGTTTGGCGATCTATATATAATGGTCAGATTACAATATTTTTTATCCTCTAGATTGGAGTGAAAACTATTCGGTCTAAAACTAAATACAGAGAGATACAAAGCAATGGATCCGCAAGACCACGACGTAAGTTAACTTCGCCTCTAACAAAGGCTTTGAGCTGAAAGAATAAAAAATCAATTTATTAATTTGAATCTTAATGGTGTGGCTCTCATAGGACGACACATAGAGACATCCATTTTGGGAATAGAGTAATTTTATTCCGGTTCGTCATGTGTAGCTCAAATTTATATATAAGTTTTAAATTAAAGCAGGATTAACTTTTATAATGTTGGCATGTATTGCTCTTTATAGGTGTAGTAAGAGGTGTAGAGTCGTCAACCGCGGTATATTTTACATGTAAATTTTCTTCCTTAATATTTTGCATATGTTTTCATTATTTCGAAAAACTAGTTAGAGTTAAACGATGGACTTCACATGTATTTTTGGATACCAACATGGAACATGGAACTACATTTTACTATAATTTTTTTTTTCTGTTGTTATTCGGTTTTTCTAACAACAAATGTTTTTTATCGAGAATCTTAGAACCAAGTTATGAAAAAATAACTCATAAGAATGCATGATAGCTCAAAGCTAATCGGAGAATAATCATTCTAGTATCAGTTGATTGACAATCAAGTAGTGTCCGAAGTGGAGGATACTGAGAATGATGAATCTGAAAACAAAGAAGTGACCGATCCAAATGAAGGACCAAAGAGAAAATATCAGCGTTACACATATTTGCAGAACGCTAGACTTCTGAGGTATGCTTTACCAAAATTTATGCATGTTTATCTAAGGATCTTACTAATTCTTTCTCCTTTCTTTACTTGTAGATTCTATGAAGATGATCCACATCCAAGTCACAGAGACAGAGTGGCATTAGCTAATGAGCTTGGGCTCGATCCAGAACGAGTGAAGTTTTGGTTTCAAAATCATCGTTCACAAGTGAAGGTTAAGGAAAAAATTAAATCTTAATTCGAACCTTTAAAATATATAATTTTTAATGTAAAATTTTCCATTGAACTATGACATAGCTAGCCTATACATGTTACCATATATATATAAATGTTAAATATTCACTTATGGATATAAATTTTATAGTGAGAATAATTAATCTCTTTTATGTAAAGTTTATGAAAAGATAAATTTTGGCAGATTATCGTTTGATATGCAGAAAAACAAGGAGAAGGTTTTGAACAGTAAGTTGAAAGAAGAGAACCTCCAGCTTAGTATTGTGCATGAAAATTTGAAAAGAGCTTTGGAATCGCCTCTTTGCAAAAACTGTGGCGGTATGGATATGGTGGAGTCAACACAGAGGAGTCAGCTTAAACTTGAATATGAAAATAATCAGAAGAAGGTATACAGTAAATTACACCACTTGTGTTAATTTCACGGAAACTTTATCAATGAACCATATATAATTGTTTCTTTAAATGATTTTTCAAAAAAGGAGAATCATTTAATGAACCTTGTTATTTATTGTTTAAATTTATTTTGTTTTAATAATAATAGTTAAGTTCATTAACATTGCATTAATCTTCAAAAATAATTAAATGGCATAAATAACTCAAAAGTTGGTTATTGCATTTGACTATGCAGCTCATGTATCTAAAAAGCATCATCCAGGAGTACAATTTGAGTGTTGACCGACAGCCCTGAACAGTGTGTTACAAGATGGCAATGATGTTGAAAAAGTAAAGATCGATCTATTTGAACTGGTATTATAATAAAGAACTAAGAGTTGTTATATTTGATTTAAGCTTTTGGTTGTACTTCATAAAACATGCTTGATATGTTGACGAACTTTTATTAAATTACTGAAATTTCTTTTCTGGTCCATTGCTTCTGCAAGTTAAGTTGGATTGTCTCGTTCATCATGAAATATTTATGCTATCAACGACTAATCATTTGTTTTGTCAATATATTGCTTTAGTCCGAGTCCGATGTTCAACATTCTAGTTTTCGATTCCGTTCTGGTCCTTCAAATAATATAAAATTTCGGTTTCGTTTCGAAAATTTCAGAATTTCACTTTAATTTAGATTTACGAATTTCGGTATTTTTTTTTTTTGCAAATACGGCAATAAATATGCAATATTAATACTAAATTATAGTAAATTATTCCAATTAAATAGAAAATACAAAACATATAATATAAAATATTTAATACCAAAAATTATTCTTTTGACCATCATATGAATTGTGCTCATTGTTGTCTTCGTCTTCTAGCATTCAAGATTTGTTTTTCGAACATGCTCATCAAATTTTTTTGCATGCGTTGTTTTTCAAGCTTTCATTGACTTTGTTCGCTTTCATTTTAATTAAATATTCCCGTATAGGTTTTCTAACCTCTTTAGGAACGATTGGACATGGTGCAACATCGTCGACCATTTTCACCAAATGATCTTTCATATGTGTTACGTCTCCATCAGAAATTTTTTTACTACAACGTTGCACTTTTTTTATTGATATCGACCGCTGTGCAGTAATTTCAAACAATATCATGATTTTTCATACTCAAGCACCTGACATTATAAATAAATAATAGACAAAACTTATTCAAACTATACACAATATATTTACCAAAATGTGCATTTTTTTTTTGCCAAAATCATTAACCTAATTATAATTAAAGTTTTACCCCAATTTATCTAGCCCGGAACTTAAATTACCTCATCCAAATTGTTAACAAGATTTTTTGCCAACACCCCATGGTAGTGCTAAGGAATGAAGATTATTCTTTAGGCAAAAAGAGCAGGAAGGAAAGAATGTATCCCTCTTGAATTTCCTTTCGAAAAGGCTTTAGTTGGCAAAGGTTTTTCAAATTTACCTTTCGACTCGGTCGAAAGGGTTGGTTTCTGTGCTTAATGACCTTTCGACCATATTGAGTCAGTGTGATTTCTCTTTCGAAAGTCTTCTTCTTGATTCGGTTGGAATATCCTGAATTAGGTTCGCCTCGATTGGTTTCGACCTGGTCGGAGTTCATAAGCAGTTGAATGACTTGGACTTTAGGTTAAGGATCGGAAATAGGGGTTTCGACCTTGTCGAAAGCAGTAAACATAACCTTCTTGGGTTTGAACTTGTAATCTCAAGCGATAGTGTTTTGGTGAAGGGTTTCGACCTTGTCGAAAGCCGGATCATTGAGCACCTTGTACTAGTTGAAGGCTTAAGTAAGTTGTGACTTGATTTCGACCTTGTTGAAAGCTAAAACTTAGAAGAAGGTCACTTAAAGTATGAACTTGAAGTTGTTTAAATCTGTTAGGTTTTGACTGTGTCGACAATGGCATTTCGATGAAGGCGAAACCTGAAACACAAGAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021986984.1	1.1e-14	homeobox-leucine zipper protein HDG1-like
Swissprot	Q9M9P4.2	3.3e-13	Protein HOMEODOMAIN GLABROUS 8
trEMBL	A0A3L6PDH1	1.9e-13	Homeodomain GLABROUS 11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	39.82	1e-18	90.5	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g199889	AT1G73360.1	113	68	0	48	160	33	145	39.82	1e-18	90.5
g199889	AT2G32370.1	122	71	2	29	146	46	167	38.52	3e-18	89.4
g199889	AT4G21750.2	125	74	1	38	160	51	175	39.20	5e-18	88.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	48	104	52.1	3.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0008544	P	epidermis development
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009845	P	seed germination
GO:0009889	P	regulation of biosynthetic process
GO:0009913	P	epidermal cell differentiation
GO:0009987	P	cellular process
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0030855	P	epithelial cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048825	P	cotyledon development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060429	P	epithelium development
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090351	P	seedling development
GO:0090627	P	plant epidermal cell differentiation
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network