result

Gene information

Detail information of g199946

Location

Gene	Chr	Start	End	Strand
g199946	CHR6	259974675	259977689	+

Sequences

CDS

>g199946.t1
ATGGACATGGATACTGGTTCCCATAACTGGCTTTCCTTCTCCCTTTCCAACCCTTCTTCCTACTTCCTTCAACATGCGGCGGACGACGGCATGGGCCCAAAGTTGGAAGACTTCTTAGGAGCTGGCGGCGGCGACCAGCCGATTAAGTTCACCGGCGGAGAAGCGGACACAAACAATAATAATGAGATCTACGTGGACAGTAATGATGAGTTGAGAAGTATCGCTGCTGCTGGCTTCTTGCATGCAGGTACTTCTTCTTTACCTGCCGACCACGACGCTGACGTCAGCAAGATGGTCGTGCCGGAGGCCAAAAAGCCTGTCGATACTTTTGGTCAGAGAACATCTATTTACCGTGGAGTTACTAGGCATAGATGGACTGGAAGGTATGAAGCACATCTCTGGGACAATAGCTGTAGGCGTGAAGGGCAGAGCCGCAAAGGAAGACAAGTATATCTAGGTGGATATGATAAAGAAGACAAGGCAGCTAGGGCATATGATTTAGCTGCTCTAAAATACTGGGGTCCGACCACAACTACCAATTTTCCTGTATCCAATTACGAAAAAGAGCTGGAAGAGATGAAGAACATGACTCGTCAAGAGTTCGTTGCATCCCTTAGAAGAAAGAGCAGTGGATTCTCTAGAGGAGCTTCAATTTACAGAGGAGTTACCAGACATCATCAACATGGTCGATGGCAAGCAAGAATCGGTAGAGTAGCGGGCAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCCGCAGAAGCCTATGATATAGCAGCAATAAAATTCCGAGGCCTAAACGCAGTGACCAATTTCGACATGAGCCGCTATGACGTGAAAAGCATTGCAAACAGCAGTCTTCCAATAGGTGGTATGGCAGGCCGGGCTTCAAAGCCCGATAACTCATGCTCTTCTTCCGATAACAATGCCTTAAACATCATGGATGCAAACCATCAAAACGACTACCAAGACTCATCATCGAATATCAGTTTCTCCATGCTCCCGATCAACAAACAAGAGCAATACCATCAAGATTACTATTCTTTGCTAGCTTATCAACAACAGCAGCAACAGTATGGAATGTTAGCTTCAGGTGTGAATATGGATTTTGCTAACAATGAACTGGTCTGGAGTAATGGTGTTCTGCAGCATTCACAGTCGGTTTTGAACAGCAATGGCGGTATTCCTTATGCTACTCCAATCAGTGCAGGATATGATCAGCAAGGCCAAAGTTATTATATGAGTAACCTGGTGAGTAATGGAGGATCATCAGCTGCTTACTATCATGAAGCGGCAAAGTCCAGTAGTAATAGTAGTAATGTTGCATTGTTTCATAGTCCTTTGTTTGGAATGGAATGA

Protein

Gene

>g199946.t1
ATGGACATGGATACTGGTTCCCATAACTGGCTTTCCTTCTCCCTTTCCAACCCTTCTTCCTACTTCCTTCAACATGGTAACATTTCTCTAAACCTACTTCACTTAATTACATGTTTCTTTTTATTCCCAGAATATCTTTTTGATAACTAGTTTCATAAGCAGCGGCGGACGACGGCATGGGCCCAAAGTTGGAAGACTTCTTAGGAGCTGGCGGCGGCGACCAGCCGATTAAGTTCACCGGCGGAGAAGCGGACACAAACAATAATAATGAGATCTACGTGGACAGTAATGATGAGTTGAGAAGTATCGCTGCTGCTGGCTTCTTGCATGCAGGTACTTCTTCTTTACCTGCCGACCACGACGCTGACGTCAGCAAGATGGTCGTGCCGGAGGCCAAAAAGCCTGTCGATACTTTTGGTCAGAGAACATCTATTTACCGTGGAGTTACTAGGTATGTATACTATTGCTAAGTTATAGGTTATACGTTGATCATCTATCGCATGCAAAAGTGATAACGACTTTGTATTTACCATAATTTCTCCATTTAAAAATAAAATACATAAAAATGATTTCTTTTTTTGATTCATTGATTGAAAATTGTGATGCAGGCATAGATGGACTGGAAGGTATGAAGCACATCTCTGGGACAATAGCTGTAGGCGTGAAGGGCAGAGCCGCAAAGGAAGACAAGGTATATTTTGCTACTGCGGATGTATCTTTGCAACTTAAATTTTAAATTATATCCGATTTTATACGACTAACAAGGGCTTTTTTGTTTGTTTTCTTGCTATGTTACGTGGCAATTATGGTTGATCATTCTACAGTATATCTAGGTATCATGTTGTCCTAAGACTAACAACATGCTTCATTGTTTTTTTAATCGTTCAGTTTTAGTCTTATTTACAAGTTTTGAATTTAATACAATAGGTGGATATGATAAAGAAGACAAGGCAGCTAGGGCATATGATTTAGCTGCTCTAAAATACTGGGGTCCGACCACAACTACCAATTTTCCTGTGCGTAGTTCTTCTTCCAATTAGACAGAGTTATGCATCGAGGGAAAATTGCATCGAATAATGCAAATTAATTACGTTTATTCACGTATTCAGGTATCCAATTACGAAAAAGAGCTGGAAGAGATGAAGAACATGACTCGTCAAGAGTTCGTTGCATCCCTTAGAAGGTGTGTACAGTTTCATGTTTAATTATCAATTCTTGATATTTTTTTACTAGTGTGATGAATCGTTTTAGTTGATCAATATGTTTATTTTGAGTAGAAAGAGCAGTGGATTCTCTAGAGGAGCTTCAATTTACAGAGGAGTTACCAGGTATTTTATCACTGCTGTTTTGATAAAGATGAGAAAAGTTTACATTGACGATTAATTTGGCTTATCTGTGTTATAAGACATCATCAACATGGTCGATGGCAAGCAAGAATCGGTAGAGTAGCGGGCAATAAAGATCTCTATCTTGGAACATTCAGTATGTTTTTCCTTTTTAACCTTTTGTTCAAATATCCATTTTTATCTACTTTAATAATAATGTCTTTCTTTTAAAAGTCAGTCGGAGCTCATATTCGTGTACTTTTTGTTCAAACCTGTACAAATGGAATCCAAGAACAAAGAATAATACCTCATTCAAATTTTAAAAGCTGCACCATTTACATTTACATTTACATTTTCATATAGAACAATTGCCTGCATACACCACCATTTTATGGTGGTGTCGCATTATGCGTAACACTCAAGTTAATATGTTTATACGTATTCTTCTTTGCGTTATTGTTTCTTCATCTCCAAGTATTTTAATAACATGCTAATAAACACATTACTTAATTAGGAGCGTGAGTATGTATGTTTCCTTTACATAAAACAATGACTAAGCCAATGACCACTCTTACAATAGTAACATTAGATTGTTGATCTAGTAGTAAACTGTTCTTGTGTGACAAAAATCCTTTCTCTTACTACCTGGCAATAATATGTAACAATAATTGTTGGCCCACGAAATATGAAATTGATTGGTTTTTTCTATGTTTGAATACGGTATAATTAAGTTACGTTTAGCAGCAGCGAATTCTTATCATCCAATAGTAAGAAATTAGATTATATACATTACCCCTTTATGACTCCAACATGATTATTGACACTCAAAATAATGAATTAAAAAAAATTACCGTTAAGGATGTTGAAAGAATATATAATAGAGCTTGAACAAATTAGGCACCCACAATAAAGAATACTGATCATCAAGGATCTAGTAGCCACTAAAAATGTGGCGTTCACAGTTTTGATCAATATATTCATGCTGGATTTGGTGTCCAAGTTCTCGCCCTTTTTTTTCAAGAAAAATGATGTACCTCTAGCGTGAAATATTTAACTTTATGCTTGTATAGGCACACAAGAAGAAGCCGCAGAAGCCTATGATATAGCAGCAATAAAATTCCGAGGCCTAAACGCAGTGACCAATTTCGACATGAGCCGCTATGACGTGAAAAGCATTGCAAACAGCAGTCTTCCAATAGGTGGTATGGCAGGCCGGGCTTCAAAGCCCGATAACTCATGCTCTTCTTCCGATAACAATGCCTTAAACATCATGGATGCAAACCATCAAAACGACTACCAAGACTCATCATCGAATATCAGTTTCTCCATGCTCCCGATCAACAAACAAGAGCAATACCATCAAGATTACTATTCTTTGCTAGCTTATCAACAACAGCAGCAACAGTATGGAATGTTAGCTTCAGGTGTGAATATGGATTTTGCTAACAATGAACTGGTCTGGAGTAATGGTGTTCTGCAGCATTCACAGTCGGTTTTGAACAGCAATGGCGGTATTCCTTATGCTACTCCAATCAGTGCAGGATATGATCAGCAAGGCCAAAGTTATTATATGAGTAACCTGGTGAGTAATGGAGGATCATCAGCTGCTTACTATCATGAAGCGGCAAAGTCCAGTAGTAATAGTAGTAATGTTGCATTGTTTCATAGTCCTTTGTTTGGAATGGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	NP_001290493.1	2.0e-132	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3.2	4.1e-106	Protein AINTEGUMENTA-LIKE 5
trEMBL	A0A8K0MUB0	2.6e-134	AP2-like ethylene-responsive transcription factor AIL5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57390.1	64.56	7e-114	407	AIL5;CHO1;EMK;PLT5	AINTEGUMENTA-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g199946	AT5G57390.1	333	83	10	32	340	100	421	64.56	7e-114	407
g199946	AT1G51190.1	247	52	2	73	309	138	384	74.90	6e-106	381
g199946	AT3G20840.1	207	31	1	104	309	169	375	84.54	4e-105	378

Ortholog group

Species	Genes
Allium cepa	g199946.t1
Allium fistulosum	AfisC6G01750
Allium sativum	Asa8G04796.1
Arabidopsis thaliana	AT1G72570.1
Oryza sativa	LOC_Os04g55970.1; LOC_Os04g55970.2; LOC_Os11g19060.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	115	174	45.2	7.6e-12
PF00847.17	AP2	Domain	217	268	39.2	5.6e-10

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009734	P	auxin-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009845	P	seed germination
GO:0009889	P	regulation of biosynthetic process
GO:0009956	P	radial pattern formation
GO:0009987	P	cellular process
GO:0010015	P	root morphogenesis
GO:0010033	P	response to organic substance
GO:0010101	P	post-embryonic root morphogenesis
GO:0010102	P	lateral root morphogenesis
GO:0010311	P	lateral root formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0040019	P	positive regulation of embryonic development
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045995	P	regulation of embryonic development
GO:0048364	P	root development
GO:0048518	P	positive regulation of biological process
GO:0048527	P	lateral root development
GO:0048528	P	post-embryonic root development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051094	P	positive regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060771	P	phyllotactic patterning
GO:0060772	P	leaf phyllotactic patterning
GO:0060774	P	auxin mediated signaling pathway involved in phyllotactic patterning
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071365	P	cellular response to auxin stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0090351	P	seedling development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network