result

Gene information

Detail information of g204987


Location
GeneChrStartEndStrand
g204987Scaffold_51581:HRSCAF_4346674739449659-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020275529.16.6e-82LOW QUALITY PROTEIN: myb family transcription factor EFM-like
SwissprotQ5VRW2.24.3e-38MYB-domain transcription factor NIGT1 homolog 1
trEMBLA0A6I9SE684.8e-66myb family transcription factor EFM

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G25550.136.931e-40 164myb-like transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag204987.t1; g331402.t1
Allium fistulosumAfisC2G01545; AfisC2G09123; AfisC3G08109; AfisC5G02337; AfisC5G04855; AfisC5G06640; AfisC7G03520; AfisC7G04429; AfisC7G04434; AfisC8G01543; AfisC8G01589; AfisC8G04893
Allium sativumAsa1G00890.1; Asa4G04874.1; Asa4G04879.1; Asa6G06490.1
Arabidopsis thalianaAT1G49560.1
Oryza sativaLOC_Os03g55590.1; LOC_Os07g02800.2; LOC_Os07g02800.3; LOC_Os07g02800.4; LOC_Os12g39640.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain29034130.42.9e-07

Gene Ontology
AccessionOntologyName
GO:0000156Fphosphorelay response regulator activity
GO:0000160Pphosphorelay signal transduction system
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0035556Pintracellular signal transduction
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0007568Paging
GO:0008150Pbiological_process
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009873Pethylene-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010015Proot morphogenesis
GO:0010033Presponse to organic substance
GO:0010073Pmeristem maintenance
GO:0010075Pregulation of meristem growth
GO:0010082Pregulation of root meristem growth
GO:0010087Pphloem or xylem histogenesis
GO:0010088Pphloem development
GO:0010089Pxylem development
GO:0010119Pregulation of stomatal movement
GO:0010150Pleaf senescence
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022622Proot system development
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048364Proot development
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048507Pmeristem development
GO:0048509Pregulation of meristem development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048638Pregulation of developmental growth
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060089Fmolecular transducer activity
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071310Pcellular response to organic substance
GO:0071368Pcellular response to cytokinin stimulus
GO:0071369Pcellular response to ethylene stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0080050Pregulation of seed development
GO:0080090Pregulation of primary metabolic process
GO:0080113Pregulation of seed growth
GO:0099402Pplant organ development
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000280Pregulation of root development
GO:2001141Pregulation of RNA biosynthetic process
GO:0090693
GO:0140110
GO:1905392

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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