result

Gene information

Detail information of g208649

Location

Gene	Chr	Start	End	Strand
g208649	CHR2	40783776	40786057	+

Sequences

CDS

Protein

Gene

>g208649.t1
ATGAAGATACAGTGCGACGCGTGTGAGAAAGCAGCAGCAGTAGTGATATGTTGTGCAGATGAGGCTGCACTATGTGAGAAATGTGACGTTCAGATTCATGCTGCTAACAAATTAGCAAGCAAGCATCAAAGACTTCCTCTTCATACTCTTTCCAATAAGCTTCCTTTTTGTGATATTTGCCAAGTAACTTCTTTTACCTCATTTCTTCATCGTTTTTTTATTGTTGTTGTAAATTCATCCACACCAGTTCAGTGTTGTAGTCCATGAAATCATCTGCTTTGTAACAAAATTTTGTATCAATACACCACGGATCTAATATTTGTGTTCTATATATATACACCGATGATTCATTTTTGTTGACTGTTATTATGCCATGTCATCTTTTATATGGATCGTTAGAAATTTGGAAAACCAATCGAAACTTGGTTTGCATCAATCTTTTACTGAATTATATCAGATATCATGAGATTTTCTTGACAAGATAAGTGCAGAATCTCATTTTTGATTCTCATGTATCATTTTAAAAGCTTCCATCCAGTAAAATGTGTGGTAAGTTTTTTTTTTTTTTAAAAAAAATGCACTACACAGCCATTTACTTCTTTCGTAACCATACAAGGCTATTAGCATATTCATTGTCCTACTCTTAGTTTTGCATAATCACTGAATCTAATATATAATACAGATCCAGATATTCAAGACTGCTATGTTTAATGTTATGAATGTAACATTAGATTAGCTAGATAATATGATAGTTCACATGCCTCTCCTCCTAATATTATAACGTGTAAAAATGACCAATGTAATATTTCAGATGAACATATTGACCTACTCATGGATGTGCCATGGAAACATGTTGAAGAAAAAGTATAATCAACCATATACAACGATCACCTCTATAATTATATATTTTGTATTATAAGTAATGTAATTAAGCATCGTTAGGTTTTAAATTGTACATTGGCTTCTGCGATTTGTCTTTAGTCGTACGTCGTCTAAATATTTTTATGAGATGGGGCCTATAACAATTAATTTCTTTAGCTATTAGTTTAATTTGTTGCGATCATAACCCATGATATGTATGCTGCCACGTTACTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAACCAATAGTTTTCTACTTGGAGGAATTCACTGTTGCTGTCTGCATAACCCTCCTAGTCTTTGTATCCTAGGATAAGCATTTACTTGGACCCAACAACTTACTCTTCAAGTGACGACCAATAACCTTTTAAAGATAGCGTCGACTTACTTTGCACCTCAAAACCTTTTTCCCTAATCATCTTACCGTATAAATTTCTAACAGGCATCAGTTTTTAAAGTAAGTGACACAAACATGTACATTAGAAGATGAAATGCATCAGGATAGGATTTTCCTGACTTTTCAAATATAAAAGTGTTATAACACAGATTTCTTGTCGAAACACTTAGGTTATGGCCCTTCAGAGATAGTCTCTCTTTTAAAAAAAATTGTTATTTCATAGGACAAGGCAGCATTCATATTCTGCGTAGAAGACAGAGCTTTGTTTTGTCGTGACTGCGACGAAGCTATCCACGTTGCTGGAAGTCTTTCAGGAAACCACCAACGCTACTTAGCCACTGGCATCCGTGTAGGTTTGAGATCAATATGCAGCAAAGGTTCTGACAAGATCCAGTCTGAACCCCCTAACCAGAATTTTGCACTCTCAGGCCACAAGATTTCCCTCCCTCAAGAACAAGTGTCTCCTTTCATGCCTTCTGCTTGGGCTGTTGATGAATTCCTCCAGCTCTCTGATTATGAATCTAACGATAAGGTACTAAAATACTCTATCTTTCTTGAGTACCAAATCCAGTGGTTATATATGTTAGAAGCATGTATGCATGCATCCCTTCATTTTTACACAGTGACTACAAAAAAAGTATAAAGCATGACTCTGTATAATTAAGATGATATTACTCACATATAACTTACTCATCGTTTGTTTGTGTACTGCAGTTGAATAAAGGATCTGAAGCTGGATTTGGAGAACTAGATTGGTTTACAGACATTGGTCTTTTCCAAGAAGAATTAGGTCCCAAAACAACAATGCAAGCAGCTGAAGTTCCAGAAATGCCAAGCCCACAAACAAGCAATGCTGCGTATTTCAGAAACAGCAACAACAAATACAGCAACGGCATGATGTCTTACAACAACAAAAGCATGCAGTACAACAAAAGGCCAAGGGTTGAGGTTTCTGATGAAGAGGAGTATTTCACGGTTCCTGATCTTGGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010930223.1	1.1e-87	B-box zinc finger protein 24
Swissprot	Q96288.1	3.4e-65	Salt tolerance protein
trEMBL	A0A6I9RY52	8.0e-88	B-box zinc finger protein 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06040.1	54.17	3e-67	251	BBX24;STO	B-box zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g208649	AT1G06040.1	264	97	7	1	256	1	248	54.17	3e-67	251
g208649	AT2G31380.1	260	101	9	1	256	1	238	51.15	1e-60	229
g208649	AT1G06040.2	169	55	2	1	165	1	169	65.09	7e-54	207

Ortholog group

Species	Genes
Allium cepa	g208649.t1
Allium fistulosum	AfisC2G08787; AfisC2G08799
Allium sativum	Asa6G00743.1
Arabidopsis thaliana	AT1G06040.1; AT1G06040.2; AT2G31380.1
Oryza sativa	LOC_Os02g39360.1; LOC_Os04g41560.2; LOC_Os04g41560.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	53	95	29.4	6.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003712	F	transcription cofactor activity
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009648	P	photoperiodism
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0010099	P	regulation of photomorphogenesis
GO:0010100	P	negative regulation of photomorphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048573	P	photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080167	P	response to karrikin
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000030	P	regulation of response to red or far red light
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network