result

Gene information

Detail information of g208673

Location

Gene	Chr	Start	End	Strand
g208673	Scaffold_51993:HRSCAF_435079	103520	105331	-

Sequences

CDS

>g208673.t1
ATGCGGCGTGGCCCAGAGGGTCGCAGCACTTTATGCAATGCATGTGGGATTGCATGGAGAAAGGGAAAAGTAAGGAAAATAATTGAGACAAATGCTTCTAGGGAAGATGCTGATAACTCAAACATAGTGCCAGAAGTAGGAATGGAGTTCGAAAACGATGAAATGGCATATGAATTCTACAACAAATATGCTGGGATAGTAGGATTCAGTGTCCGAAAGGGCAAGATTTTTAAATGGTCAGGGAATATAAGATCAAGAACATTCGTATGCTCCAGGGAAGGCTATAAAAAGGACAAAAAAGGAGCTAAAGAAGTTAAAAAGCCAAGAGCTGAAACAAGAATAGGATGCCGTGCGCAACTGATCATTAAACTTTCCGCAGACAATGTGTATCGAGTAACTGAATTTGTAGCTGAACACAATCATCCACTTGCACCTCCTTCATCGGTACACTTGTTAAGATCACAACGTGTTCTCACCGAGGTTCGTAGTTCTGAAACTGATTTATCGATCAGTGTGACCCCACCAAATGTGTCTTCTGGTCAAAAAGTGGTTTGTTTCAGAGATATCAACTTTCTACCTAGTGATTATAGAAGCTCTATCGGGAAGAAAAGAATGAAAGAAATGCAAAAGGGAGATGCTGAATCTGTATTAAAGTATGTTCAAAGCATGCAGCTTGATGATAGGTCTTTCTTTCATGCAATTCAACTGGATGAAGATGATAAAATGACGAACATATTTTGGGCAGATGCTAAATCTATAGCGGACTTTAGCTATTTCGGAGATGTGGTATGTTTAGATAGCACTTATAAAGTAAATAGTTATGGTAGACCATTGGCCTTATTTATAGGGGCAAATCACCACAAACAAGCTATTGTATTTGGTGCTGCATTGCTATACGACGAATCAGTTGAATCATATAAGTGGCTTTTTAAAACTTTTCAAATTGCTATGCATGGAAACCCGAAAACAGTTCTTACACAACGGTCCGCTGCAATAAGTCAAGCACTAACTGTTGTATGTCCAGAGACAAATCATCTTTATTGTGTACGAAATATTTATTTAAGTTCTGCTAGGCACCTTAACCACATCTTCCAAGGTTCAAAGGATTTTGCTATGGATTTTTCCAAGTGTTTATATGAATACGACGATGAAGAAGAATTTACTGTAGCATGGTCATCAATGTTAACTAAGTATGACCTTGTAAACAATGAGTGGCTTTTGAATACATTCAAAGATAGGCATAGTTGGGCTTCTGCATTCATAACTCACATATTTTGCGCAGATATAAACAGCACATTACAGAAAGAGAACTTGAATGTTGAACTTAAAAAGTATTTGAATGTTCAACTTGATCTTCTATCATTCTTCAAGCATTATGAGAGATTACTGGATGAGAACAGATACGCAGAGCTGCAAGCAGATTTCCATGCCACTCAAAGTTTTCCTAGAATACCGCCTTCAAAAATGTTGACCCAAGCTGCAAAAGTATACACACCTAGTGTTTTTGAACTATTTCGAAAAGAGTTCGAGGTATTTTTGGATAGCGTACTATGCTTTTGCGGCGACGAGGAAACAATGGGTGTGTACAAAGTAGTTGTTGGGGAGAAACCAAAAGAGCACTATGTGAAGTTTGATTCTTCTGATAATTTGATTGTATGCAGTTGCAAAAAGTTCGAGTTTGTTGGAATTCTTTGTGGGCATGCAATAAAAGTACTGGATGTTAGGAATATTAAGGAGATTCCCACACGGTATATTCTGAAGAGATGGTGTGTGAATGCTAAAGTTGAAGATGGAAGCAAAGAAGCCAGTTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244856.1	2.0e-233	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SWG3.1	2.9e-83	Protein FAR-RED IMPAIRED RESPONSE 1
trEMBL	A0A804L2B9	7.8e-227	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	35.42	7e-101	364	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g208673	AT4G38180.1	576	359	8	31	594	60	634	35.42	7e-101	364
g208673	AT4G15090.1	567	370	10	41	594	48	609	31.57	8e-84	308
g208673	AT1G76320.2	552	356	8	48	594	1	544	33.15	2e-82	303

Ortholog group

Species	Genes
Allium cepa	g208673.t1
Allium fistulosum	AfisC6G00589
Allium sativum	Asa8G06224.1
Arabidopsis thaliana
Oryza sativa	LOC_Os03g08370.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	1	24	33.7	1.8e-08
PF03101.12	FAR1	Domain	58	145	85.4	3e-24
PF10551.6	MULE	Domain	262	352	82.7	1.8e-23
PF04434.14	SWIM	Domain	529	574	26.9	2.5e-06

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network