Detail information of g20871


Location
GeneChrStartEndStrand
g20871Scaffold_13091:HRSCAF_14479710438461046654+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020246188.13.7e-41probable mediator of RNA polymerase II transcription subunit 26c
SwissprotF4KFC7.11.3e-14Probable mediator of RNA polymerase II transcription subunit 26c
trEMBLA0A5P1E7T82.6e-41TFIIS N-terminal domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G09850.142.648e-33 137Transcription elongation factor (TFIIS) family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag20871.t1; g366867.t1
Allium fistulosumAfisC2G08189; AfisC4G05299; AfisC7G05133
Allium sativumAsa6G01060.1; Asa7G06166.1
Arabidopsis thalianaAT5G09850.1
Oryza sativaLOC_Os11g06650.1; LOC_Os12g06850.1; LOC_Os12g06850.2; LOC_Os12g06850.3; LOC_Os12g06850.4

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08711.8Med26Domain18923232.94.4e-08

Gene Ontology
AccessionOntologyName
---

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.