result

Gene information

Detail information of g209296

Location

Gene	Chr	Start	End	Strand
g209296	Scaffold_52079:HRSCAF_435165	373519	377986	+

Sequences

CDS

Protein

Gene

>g209296.t1
ATGGGAAGGGGAAAGATTGTGATAAAGAGAATAGACAACAGTACAAGCAGACAAGTGACATTCTCGAAGAGGAGGAATGGATTGCTGAAAAAGGCAAAAGAGCTCGCCATTCTTTGTGATGCCGAGGTTGGATTGATCATTTTCTCCAGCACTAGCCGCCTTCACGAGTATTCAAGTACTAGGTATGCGTCAAGTTTTATGCTTTTTTAACAAAATTTAATCTATTTCTTTGGTTCGATATTGTTGGTTACAGTTGAAGTTGTATTTATCTCCTGAATTACCGTTGTCTTTTTTCGTTTTCTTCCTCGTCTACTTGGATAGATTGTTCTCGGCTTACTGTCAGTTTGATTGAATATTATATTATCAATTTTTGAGATGGGGGCCATTTGTTTGTGAGATCTTTTGATCACTAACCTTTTAGGGTTGTTCTTTTTTAGTTTAATTTAGAGTAATTTTGTTTCTTATCAGAAAAAAAAAGTGAATCTATCATGAATTTAACTTCTATATGTGTTGGTAATAGAACCAATATTTTTTTTTTAATATTAGACATCAACGTTGTATTCATTAATATGAACATAAGCATAGTACTCTCAAAGTTTGAACTACGAGTTTGTTAACTTATACATTGGTAATAAATCACCCCAAAAAATTTTAAACGTGCAAATATTCTACTGTGCACAAGGATTCGCTTATGTTCATCCAAAGGCAATCCCGGAGAAAGATCGACCCCGACTGAACTAAGTACGGGTTTCAAAAAGAATTTCTGAAAAAAAATTTGTGTTATTTTATGACTGTAGAAAATATTAATTTTTGTTATCTTATTCAACTCATCTTCATCAAGATGGTAAACAACTTGATTGCCTATGCTACTGTTTGACAAAATCTTTTTTGTTTTTGTTTTGTTTTTGTTATATGTTTAATGTAACTCTGTTCTACTTTTATAAAGCAAGCAATATATTTTATTTTAAACTGATAATATTGCAATTCATATGTTATAGGAGTTTTTTGCTGATTGTATAAGTCTTATGTCAATACTACCTGAACAAAATATTCAAACAGCCTTTTTTGTTTGTTTTTGTTAGATTTTTGTTTGTTGGACAAAGCTAAATTGATTTCATTTCTAAACTTATGGATTCTACAATTATACTCAATAGCAAACATTCACAAGCCATATATTTATACAAATATTTAAATTTTGACTTTAAATATTGTTTTTCCCATGGGTTTAATAAGTAGGATCCTGTTAACTTTCAAATAAACTAACATATGAATATCTGTGATAATATATGACCAGTATGAAATCGGTAATTGAACACTATAGCAAAACAAAAGAGGAAAACCAGCTGCTGCAATATGGGAATTCACAGGATAAGGTATGTTCAATTTGTTTTTAATTAGTTAATGAGCAGTTTGCAAATGCAAGCAGGCTGAGAATTAGATGCACTTTTAAAATACCAAGTAGAACTAACACTGTGATCTGAACTATCTTTACCAGCAGATTAACTCATACACTACTAACTTTTATGTAGCCATTAATAATGTATGAAGCTATTTAATTTGAAACTTAGTACTAGCCCCAGTAAGCCCACCCAACGACTAAATGGCAGCAAGATGATTCAAAACATGACTTATATGACTTCGTCATGCATCATGCATGCTGTGCATAGATATACTTTGGTGACACTTTGAACACTACTACCTTGTATTGAAAATGATGCATCTTTTCTGAATTATGTGTTCCCATTTAGTATTATATCAAGCTTCGCATATTCATAATACGCACACTATAAAGGATACTCAAGCGGTTCTAGCTATATGCAACAACCACATAAACAAAATTTCTAGCAGTAACATGCTAGTCATGAATTTGCACATACATGCATTTTATTTTCTTTACAGAATCAGGGTTGAAAATAGGTGAGGGTGTGTGTATGAAAGCAAAGAAAATCATAAAGGGTCTAATATTTGTTAAATTATATTAGACACTAAGTAATACAAATATAGAATAAATGATCATGGGCACAAAAGATAATTTCATTTATGTTAATAAAAGAACAGAAGGCTTTCAGAACATGGTATAGTTTTCTTTTACTTGTAGTGCAACACCGATCCATTAATATGGCTTTAAATAAAAACTTAATATTAACTTATTTACTTCAATGATTGTCCGCAATCGTGGCACGGTTGATTAGGACATGCGGCTCTCTCAACTTAGAGGTTGAGAGTTCAATCCTGTCCAACTACACTCCTTCTATTATGATATACGTAGGACCATAGACAAACTATTATAATTGAAATGCTAAATATGTTGCTTACCTTATCAGTATTGGCAAAATGAGACAGCGAGCTGCTTGAGACAACAATTGCGGAGCTTAGAAGAAAACCATCGGTATGTATCTTGTGCAGTTCATCTATGAATTACCAGATGCATTTGTTATTCCTAACTAATTAACACATACATATACTTTGCTACTAATAATGAGAATTTTATGAACTAATTTCAATCGTGTCTTTTTAGATTACAAATAATACCCTAGCATCTTTGTCCACATTTCCCCGCGTCTGCTTAGTATTACATAATACAAATTAACTGAATATATTGGTACAGAACCTTACTTTAAAGTTCATACATATTACATAAACTTCATACATACTTCAATCTTCAGCAGACAGCAGCGATCCAAATTACACTAACCATGAATATATGTGAACTAAATTGTTCAACTGAACCGAATTTATATACGTGCATATTGTTTAACACACATATATAGGCATTTATTAACTGAATATATATAATTGAAACTGTATAGGCATATTGTTTAACTCGAAATATATGAACACATACATATTGTTGGTTATTGAACTACAGGTAGAACTGAACGCAAACAGTTAAGAACATTAAGTTGTGTTAAAACATATAACAAAACACGCTGAAGTGAAGTTAGTTTAGAACATGCACGATTGACAGTAAGAACATGTTGTTAAGAACTGAATATATTGATTTATATTAAATTTATACGTTACATGCTATAAGTCATTTGTGTTAAACATGCACACTTGAAACTATTACTGTTACTATTATGTGCTATATGCACAGTTTTATACAAATCATAAGTCATTTTAGTTAAAAATATAACAAAATAGTCATTTTAGAAGATGTTTTGTCACACACACGTATGTATCTGTGTGTGTGGTTAAGATTTACAAGCGAAGTGAAATTAGTCAAGTTACCAAACTGAAATTTAGAACTTAAGTTCATATATACATATATTAGAATTGATTAATGAACTATATTGTTATATCTCTACTATTTATAAAGAGAATTTAATCAACATGATTTACATGGTATTTTTTGAAAATTTAAAATCACCCCTCTTCGTTAATAAAATCTTACCACCCTTTCCGACTATCCACCAACAAAAAGTTTACTATCAATTTGTCCTCGATATCATCAACAAAACAATTTAACATGTGTTGTGACTACAAAAACATTTGCACTTAAAACACACATCCATGCAAGGTAAACAGATATTAGATACACGTACGTGCGTTGTATACTAGTATTACTATAAATAGTATTCATTCTCATGTTTGCATTATACCCACGAAGAATCAACAAAAAAGTATTTTGAAACTATTTACTATGAAACTTAAACAAAATTCAAAAATCAATATGGTTGTATACATTACGCACGTATATGATAAACAACATATATTGACGTTGATTAAATGTAGAATGCTGATGGGAGAGGAGCTGTATGGATTAAGCATAACAGATCTCAAAAATTTAGAAGCTAAGCTAGAAACCAGCCTGCGCAATGTCAGAAAACAAAAGGTATCACAAATCTTATTTTTCAAGTCATGCTTAATGCATGCAAACTACCTCTTCTTTCTACATTAAAACTCAAACCTTAATCAACTTATATAAAGAGGAGGTGATTCAGTATATGATTCTTTTCCCTTTTATAATTTTGTGCTACAGGATCTGATACTTTCCAATGAAATTCAAGAGATCAATCAAAAGGTTCATAGTAAACAATACTGCTCTTATATACTTTGCAAATAACTGTATGTTAAATCAAGGTTAGGTTTTGCTAACTTTTCCCAACTCTATTGCAGGGCTATCTTATTTATCAAGAAAATATCGAACTTCATAATAAATTTAACCTTGCATGCCATGAAAACATGGAATTACAAAAGAAGGTACTGTTTTGATAGAAAAGAATTAACTATTCTACATACATGAACTTTAAGTTGCTTGTGTTAAACCATGTAAAATTTAAAAGCTCTTACATCATAAACTCCTGGAGTCCAAATTGAAAGTTGCTTTGTTTAATTTTGGTTAATGGCCATGATCTTAATGTTATAGGTATGTGGATCTAAGAGACAAAAGAGTTTAGATATGAACCTGCAATTGCGCCAACCTCAGCAACAAATAAATGTAGTGCAAGCTTCTAAATATGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274241.1	1.7e-52	MADS-box transcription factor 23-like isoform X3
Swissprot	Q6EP49.2	1.5e-50	RMADS218
trEMBL	A0A6J1DZT5	3.9e-51	MADS-box transcription factor 23-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57230.1	57.40	5e-61	230	AGL16	AGAMOUS-like 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g209296	AT3G57230.1	223	76	3	1	205	1	222	57.40	5e-61	230
g209296	AT4G37940.1	217	85	2	1	204	1	216	54.38	1e-57	219
g209296	AT2G14210.1	189	69	4	1	187	1	187	61.38	5e-54	207

Ortholog group

Species	Genes
Allium cepa	g209296.t1
Allium fistulosum	AfisC8G00603
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	83.6	4.2e-24
PF01486.14	K-box	Family	83	171	69.8	1.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0009888	P	tissue development
GO:0008134	F	transcription factor binding
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010374	P	stomatal complex development
GO:0010440	P	stomatal lineage progression
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090558	P	plant epidermis development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network