result

Gene information

Detail information of g209632

Location

Gene	Chr	Start	End	Strand
g209632	Scaffold_52126:HRSCAF_435212	63678	69435	-

Sequences

CDS

Protein

Gene

>g209632.t1
ATGTCTTCCTCTTCCATTTGTATTTTTGCTATCTCTCTCTTTCTCCTAGACTACACAAGAAGTGAGATCTCTCTCGGTTCAAAGTTGAAAGCAAGTGAAAGCGATACATGGGTCTCCCAATACAAAACATTTGCCTTCGGTTTCACTAAAACTGGAACCGGTGATCTCTTTTTGTTAGCAATATGGTACTATAATCTTCCTTCCAGTCTAACAATAGTATGGTCTCCTAACAGAGATTCTCCCGTCACTAGAACTGCAATAGTAACCCTGGAAAGATCAGGAAACATTGCGTTAACTGATCAAAACAAGCTTATCTGGTCATCGAACACAACTGACCTCGATATAGACTCTGCAGTGATGTCCGATACAGGCAGCTTCATTCTATACAATAACACGGGCACTGCTCGTAGAATTGCATGGCAGAGCTTCGATCTTCCAGGCGACACTCTCCTTCCTGGCCAGAACCTATCAGCATCCCTTGAACTTACATCAAATAGATCGCAAAATGGTTACTATGTTCTCAAAATGCTACAGCAGCATACATCCCTCAGTCTTGCTCTAACGTTTATCACGTTCGATGCACGTACGAATTTCTCGTACTGGTCAAGTCCACAGATATCAAATGCAACGGGTAACGTAGTTGTGGTTCTGGATGATTCTGGAAGCTTCAGCATAACATATGGTGAATCATCCTCAGGTCATCATCATCTTCTCTGTTGGGTTTGCCGTATAAATTATCATGTTTCCTAGGTTTTTATTTCAGTCGTGTTTCTAGTGAAATTTAGAAAGCATTTGATTCGAAATAAGTATACTTTAAAACACACTGAGGAGGAAAAGAGGTAGAAAACAGTCGATTTGGAAAATGGCATTAACATATAAAATTGAAAATGGTTTTTTTTCCTGTTTTCCAGCTTTTGAAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGTTCCTTCTCCTTTTCTCTTTTCTTGGAATGAATATGATCTTTCAACTCTTTTCTCCCATGTCATTCGAAATACTGGTTGAAAACACAAAATTTGTTTTCTAGTCAAACATTACCTAAACATTTTAAAATCAGTTTTAGTAGAGCATTTTTAGTCACTTTGACCTATCTAAATACAAATCAATTTATTTTTTAACAAGTTTTAAATTCTTCATAGAAACAGACACTTTTTGCCAATATGACAAAAGGTTTAAATTCTGTATAGATTCTTTAGATAATTTGTTTACATATATATTCTAAAATGTGATCTAAATGAGTGAAAATACATTTCGATTTATTTTTTCTCTTGTTAATTTAGTTTCTATCTTTGTTCATGTCTTTAGGCAAGTGTACATACACAAGAATGAGTCTGTCTCAAACAGGACTCCATTCTAAGAAGAATAGAGTGGAACAGATGGAAATCTTCGACTGTATGAATGGAATACAAGCACTGCTAAATGGGACATTGCATGGTCTGCAGTTTCAAATCCATGTGAAGTGGCAGGAATCTGTGGAAATGGGATATGTAAGCTGGACAGTATTGGTGTAAGCTACAATTGTTCCAACTTACCAGATTTGAATACGAACATTGTGACAAAAACATGAATATGGATACATGGGCCCAAACAAACTACTATTTTTGGTTCATCCACCCATTTGCTAATTATAGCAATGTACTAGGCTTTGGATTGCCCTAAGTATTGCCAAATGGACTGCGCTGTGTTGGAGCCTTTATGGTGTTAATGAAGTGCACATGTATTGTTGACTTTGAGAGAGATGGTTTTTGGAGGCTTGCAAGATCCAAGCTCGACTTTTTCGTGAAAACAGTAATGATGGTAAAAATTCGGATTCAGAGGAAAACATGAGGGTAGAGATAGAGATGTACTTCTTCCTTTGCTATTGTGTGTTTTCTGCGCTTTTAGTTTTGCTTGCATGTTAGTGTGTTTTGGAATTAAGGAGGAGGAGGATTAAAGTGCACAAAGGATTGGTAGAGCTATGAGTTTGCCTGGTGCTCCTTTGAATTTTAGTTATCTGGAGTTGCAGAATGCTACTGATATTTCTCAGAATTACTTGGAACAGGTAATCCAGTCTTTCTTTCCTAGCCAGTATGGTATTTGTTTTTCAAATATCAATTTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTGTGTTTATGGCAATGCACATTAATTATGTATAAATGGTGTTGCTCTTCCTCAAGCAGGATTTGCCCCAAAAAAAAGCTAAACCTATCAACACTCCCCAACTTTCTTTTCCTATCCAAAATGTTGTAAAAAATAATAACACCCTATAATTTATTAAAAAAATCTTTTGATTTTTCTCTTATTCATTTCCTTCTCCATGCTTTCTTTCTCCTTCAATTAATGGCAGTAGAAGCTAATATTTATCTTCAGTTTTTACCATCAAATCTTTGCCAAAACGAACATTGTAAATAAATCAATTACATTAATGATAATAAGCTTCTATTAGGCTTTAAGTTTAAAATTATCTTGATTTTCTTGAAATTAGTTAATCGATGTGTGGAATTTGTTAAATTAAATTTAAATCTTCTTTCAAATGGGGGACTAATAGACTTTTAGAATATTGTTAGTAAATCTTCTTTAGAAAAAATAGGATATGGCATGTACAGTTTGTCATTGTAAGTTTCAAATGTTATTTCCTGCATTCTTTTATTTATTTTTAATGAAAGGAAAAAAAAAAACGAAAACAACTATCACTTGCTGTTATTAGTTCATGCTTCAAAAAGTAATTTTAGTTACTTCTCTAACAAATGGATTGACTTATTGTTGACAGCAGTAATGGAAATTTCTTGATCAAACTTTTATTTAGGAGATATTATAAGTGTCATACTTGTAGCCATAATAGTTATATATAATTTTGTAAAACTTATCATCAGGGGGGTTTGGAAGTGTGTACAAAGGAACGCTTAGAGACGGATCAGAAATAGCAGTAAAACAACTAGAAAGATTCCTACCTCACGGTGAAAAAGAGTTTGTAACAGAGGTTACAACCATTGGCTCAATGCACCACATGAACTTGGTTACTTTACGAGGTTTCTGCTCTGAAAGAAAACACAGGCTTCTTGTATATGAGTATATGAGCAATGGATCATTAGACAAATGGATATTTCCACCTCTAAGCGTTAGGGAAGAAGAAGAGAGAAACCTCGACTGGTCAACTAGGTTTCAAATAGCCATATCTATAGCTCAAGGAATAGCTTATTTTCATGAGCAGTGTAAGAACAGAATCATCCACTGTGACATCAAACCAGAGAACATCTTGTTAGATGAAGATTTCTACCCCAAAGTATCGGATTTTGGACTGGCGAAGCTGATGAGTAGAGAGCATTCACATGTAGTAACCATGGTTCGTGGCACGCGAGGGTACTTAGCTCCAGAATGGGTTAGCAATAGACCCATCACTGTGAAAGCCGATGTGTATAGTTATGGCATGCTGCTTCTTGAAATTGTTGGTGGAAGAAGAAATCTCGATATTTCTTTGGATTCTGATGAGTTTTTCTACCCTGGCTGGGCTTACAAGGTAATATTTTCAGTCCTTGAACTTCTCTTATCTGTCTGGGTGAAAACAAAGTAAAAGCCCATTTGACAACCCACATGACTTTATTTTTGAAAGTAATTTTACGATGGTTTAGATTGACTTATTATTATTTTATTTTATTTTTAAATCAAAACCAATTCACTTTGTTCAAGTAGTTTATTTAACTCCATCCAATAAAATAGTAGCAAGTAAAAGAATTTGGATGTCAGTTGGACTTTTTAACTTTAGAGTAAACTACCATTGATGTTTCACAATGGTTCAAAATTCCGACGGAATTCCGGTGAAACCATTCCTGTTCCGCTCATAACTGAAACGGAATTCGATCAATGTTCGGCTTCCGGTCTAAACTCGGGATCCGTTTTTCAAACACTGAAAAAAAATTTAAAAAATACAACGAACATATAGTAATTAAAAAAACAAATTAAATGAAACAATAAATAAATGGATAAGAAATAATGCAGTTTCATGTAAAAAAGATGTTATACTTTTGTTATTTTAGACTGAATCATAATAAAAAATTCAAAATTTTCAAAATTGATCAAAGTTTTAAAATCTCAAACGAACAGTACATAATCTTAAATAATTGTTTTTTAATTAAAGTGTGTATCTTACATGTAATATAAAAATATACTATAAATTTATGATAGTATTGAATACTTATTACCGTATATACTAAATTAACGCAAAAGAAGTGTCGGACTTAAAAAACCGAAATTAATGCAGAACTTTCGAAATTTTCAGAACGGTACAAAAAATTTTAAAATTACCAATGACCTGAACGAAAATGGAAAATGAAATTTTGAAACATGTGTTTGAGCACTATGACTAGTAACGAAATACATGTCAAATTCTATAATTCAACACCTTTATTTATAATGATAGCGTGTATCGAATAGTGACATAAAATTACTCGGGCTATTTCAGTCATTTACTTGGTGTCAAAATTAGTTATGACAGTTATAAACAACAAATAGCTACTTCTTCAATCTTAACTACTGCGGATCACATACATAAGTTATAAGGCTTTCGATTTGTGGATTTAAAGGTCTATTAATAATATACGGAGTTTTCAAACATTGATCTCAACCAAATTAGCTATAATTTGCTTGGACTACTTTAAATGAGTGGTCTAATATGTTATAAGAAATCACCAGCCATGTTAGCAAAGTAAAATTTGCTAAAATATACCATCCGCTTCATTCTCCTCTTCCGTGCCTTTTGAAAAAAACGCAAAACATAAAACTCGAAGTTCATACCAAATGGACGCTTACCTTTATATCATAGTTTTCATAATCCGACCCTGCCGCGGTTGAACCGCGAATTACCCCGGGCCGTGGAGGTCAAAGGCCGGTAACTCAATCAAACCTCCTTCATGCAAGAATCTTGGTTTGACCTTTAAATTGGCGGTTTAATCCTTTATTTGAAACCGGTTGAACCCTTTCATATGCGCAATTTCTTCATTTCAAAATTTGTTTTCGAATCTCTGTCCGTTTTATGTTCGTAATTAGTGTAGCTAGTGTAAAAGAATTTGTTTAATTTTTCATATTTGAATTAATGTGTGAATTATGAATTAATATCGTATATGTTTATTGAAGATGTTGATTTATTGTGCATTTATGGTTGATACGTTGCATCTAAATGTATTAATTTTCTAAAAAGAGTACGTTCGGTTCTCGACGGTTTGATCGGTCGAACCATCGAAATCTCGAATCTTAAGTCCTCACCGTTTGATTCACGGTCCGGTTATGAAAACATTGCTTTGTGCACATTCTATGCAACACATATTATTGGAACTTTTACATATTATGTACAGGAAATGAAAAATGGGACACCGATGAATGCTCTGGATAGAAGGATGAAAGGCAAAGTTGATGAGGACGAAGTAGGAAGATGTTTGAGCACAGCGTTTTGGTGCATACAGGAAGAATCATGGGTGAGGCCATCAATGGGAGAAGTGGTGAGAATGCTAGAAGGGTCGGTTGAGATTAACGAGCCACCGATGCCTCAGTCTATTGTTGAGTTAGTCGAAGAAGGACTGCAAAGTGTGTACTTTGCTATGAAGAGAGATTACACTTTGTTTCCTATGAATTATTCGTCTATGCTTCATAGTCAGAGATCGTCGTTGGCGACTTGTAGCTACTCGACAATGTCGCCGAGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268638.1	9.2e-220	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080
Swissprot	Q9FLV4.1	2.9e-170	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080
trEMBL	A0A6I9QYM3	1.5e-184	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G24080.1	63.19	1e-137	486		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g209632	AT5G24080.1	383	113	6	188	562	108	470	63.19	1e-137	486
g209632	AT4G32300.1	289	118	4	222	509	494	774	56.06	1e-94	344
g209632	AT4G32300.1	226	132	8	6	214	6	216	27.43	2e-10	64.3

Ortholog group

Species	Genes
Allium cepa	g209632.t1
Allium fistulosum	AfisC3G05275; AfisC3G05327
Allium sativum	Asa2G04305.1
Arabidopsis thaliana	AT5G24080.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	71	165	69.8	1.6e-19
PF00069.22	Pkinase	Domain	232	430	155.6	1.4e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network