result

Gene information

Detail information of g215233

Location

Gene	Chr	Start	End	Strand
g215233	CHR5	236497584	236500671	+

Sequences

CDS

>g215233.t1
ATGGATCCTAGGGAGAAAGAGGGCCGATTCGCCTCCAGTCAACATGACTGGTCACTGCAGGTCAACACTCCGATCAAGTCGAACGGCGAAAACGTCATTGCACAATCTCCCAATGTCTGCCTTGCGTCTCCATCTATACAAACAAACGAAAACAGACCCAGAACAAAAAATAATAATACCTACTTAAATCAGTTCAAATTTATATCCATTTCAAAGAGAAACGCAAACAAAAGAAGAAAAAAAGGAAAAAACCCAACCTTTACGTGGACACAAATCGTAGCCATGGCGGCGAGATCCAATGACAAAGAAGAAGAGATCTGGGGCACGTGGGAGGAGCTCATCCTCGCCTGCCTAGTCGAGCGCCATGGGCCCCACTCATGGGACTCCGTCGCCACCGAGATCCGCTCCCGCTCCACCTTCTCCCACCGTCTCACTCCCGATACGTGTCGAAACCGGTACCATCACTTGAAAAATCGGTTTGCCCACGTTGGAGGTGCAGCCGACGGCAACCTGATTGGAGACGACGGCAAGAACAACGAAATCCCCTGGCTTGACGAGCTCAGGAAACTCCGTGTCGCCGAACTCCGACACGAGGTTCAACGGCATGATGATTCTATCGGGTCTTTGCAACTGAAGGTCAAGAAACTAAAAGAAGAACGAGAAACCGGATCGGAATTGGATACAAAGGAAGAAGAATCCCGAAGCAAAAAAGAGATCGTCGGAAAAATTATCTCTGACGAAGATTCCGGCAGGTCGTGCAAAGAGTCCAACAGCACGGAGACCAAGAGCACACCGGACGTAAAGCCGGACGTAAAGGTTAAGGTCGATTCGAATCGGTTAATTAACGGGTCGAGATCCGGATCCGTTAACGCGAATACAAATCGAAACGGGAACGAGTCCAGCAGCGATGTGCAAAGTTCGCTTTGCCGGAGGAGAGATGGCGGCGGAGGCTCAACGTCGGTATCAGTCGTTAAAAAGACGGATGAGGTTGAATCTCAGCCGCTGATTGCCTTTTTAGAAATTATTAAGTCGAGTAAAGATGGACTGGTTTTTGATAAACGGCTTGAGAGCCAGGAAACCTCGCTATATAAAAACACAGTACGCCGCCACGTGGACCTGAAAACAATCCAAAACCGAATCGGGACCGTTGGATACAGACGTTTAGAGTTCTTCCGTGATCTGCTGCTCCTTTGCAACAACGCAATAGTCTTCTATCCTAAAAACTCAGCAGAGTCAATCTCAGCCGTCCGTTTACGCGCACTAGTCAACAAAGAAATGACCCCCAAATTGCGCAAAACCCCTCGACATTCTCCGCAATCGCAAAAGGAACCAATCAGGCCGAAGGCGATTACAGTCCAGCACCAAAAATCTGCCACGTCGGCAGCACCATTAGTGGCATGTTCTAAACGGGGCTCGTCTAAACCCGTTAAGAAGGAAGAAGCGGAAGTGACGGAGAACGGGAAGGAAAAGAAAGAGGTTAAGCAGAAGAAATCAAGAGGACTGCGGACTTTCAAAGGGCGAGGGAAGAAAGCAGGGCCTGCGATGAACCCGAAACCCGAACCCGAAATAACAGAGAGGGGAGAGAAGGTAGATAACACAAAGAAGAGAGGGATGAACTTTTTGAGCAGATTGAAGAGTGGCCCTGCTTCTACTCATGAAAACGTGGGGGTGAATAGTAAAAATGTTGGTGTCAAGAAGAAGGGGAAAGAGGAGGGTAGAAAGAAAGAGATGGGCGTCAAAAGAAATGTTGGGAGGCCGCCGAAGAGGGGAGGGAAGAGAGGGAGGGAGGAGGAGAAGGCGGAGTCGCCTGTGAGAAGAAAGAGAGGGAGGAGGTGA

Protein

Gene

>g215233.t1
ATGGATCCTAGGGAGAAAGAGGGCCGATTCGCCTCCAGTCAACATGACTGGTCACTGCAGGTCAACACTCCGATCAAGTCGAACGGCGAGTTCGAATCCATCGGCCCAAGCACCTATCGATTCGAAATTTTTTTTTTTTTTTTTGATTAATTGTTAAAAAATATGATGTTGCAATATCACTCCTTCCAAACAGAGATGAATCCAAGCAATTATGGGCTTTTAACCCGGACAGCAATAATAAAACGGCTCTGTATTCACAACACCGAAAAGATGGACCCATTAATTTATTAATGGGCTGATTTGGTAAGGCTCCTACGTTCATTCTAAGTTATAGATCTATCCTTATCCCTTAGTTGCATTAATTAATTATTACATGGCTTCAGGATGTCCGCGTCTAAATATTTTTCAGTTCCGATATACCTTTGCTATTAGTACAACCGGATACTTGTTGTTTCCAATAATCTCTACATAGTACTTTGTAGGTTCACATCCAATGTACATGCGTTATTTCATCTGTCATGATAATTGATTATCTTATAAGATAAAACAAGAATTATGTTCAACATTATAAACAAGTACAATTATTATTTTTATTCTAAAACTATAAGTACCTGCAAATCATGTTATTAATCATTATTAAAAGAAGAGAAGAACAGATAAATTTATAATAGGACATACCTGTATATATAACTGCTTAACCCACTACACGCAATGCAAATTATATTAACTTGCACAAATTAAAAAAGCCAAGAAATAGTGCTTTTATCTTTTTTGTTTTCCTCCTTCAACACCATACTACGAAATACCTATTTCATCCTACGGACATTTTTCAAATACACAATAAAACAAGGGCAGAAACGTCATTGCACAATCTCCCAATGTCTGCCTTGCGTCTCCATCTATACAAACAAACGAAAACAGACCCAGAACAAAAAATAATAATACCTACTTAAATCAGTTCAAATTTATATCCATTTCAAAGAGAAACGCAAACAAAAGAAGAAAAAAAGGAAAAAACCCAACCTTTACGTGGACACAAATCGTAGCCATGGCGGCGAGATCCAATGACAAAGAAGAAGAGATCTGGGGCACGTGGGAGGAGCTCATCCTCGCCTGCCTAGTCGAGCGCCATGGGCCCCACTCATGGGACTCCGTCGCCACCGAGATCCGCTCCCGCTCCACCTTCTCCCACCGTCTCACTCCCGATACGTGTCGAAACCGGTACCATCACTTGAAAAATCGGTTTGCCCACGTTGGAGGTGCAGCCGACGGCAACCTGATTGGAGACGACGGCAAGAACAACGAAATCCCCTGGCTTGACGAGCTCAGGAAACTCCGTGTCGCCGAACTCCGACACGAGGTTCAACGGCATGATGATTCTATCGGGTAATTATTTATGTCTTGGCTGTATTATATTCTTAAAATATCATATAGTACTCATAATTTGAGCACGTACGGATACAGGTCTTTGCAACTGAAGGTCAAGAAACTAAAAGAAGAACGAGAAACCGGATCGGAATTGGATACAAAGGAAGAAGAATCCCGAAGCAAAAAAGAGATCGTCGGAAAAATTATCTCTGACGAAGATTCCGGCAGGTCGTGCAAAGAGTCCAACAGCACGGAGACCAAGAGCACACCGGACGTAAAGCCGGACGTAAAGGTTAAGGTCGATTCGAATCGGTTAATTAACGGGTCGAGATCCGGATCCGTTAACGCGAATACAAATCGAAACGGGAACGAGTCCAGCAGCGATGTGCAAAGTTCGCTTTGCCGGAGGAGAGATGGCGGCGGAGGCTCAACGTCGGTATCAGTCGTTAAAAAGACGGATGAGGTTGAATCTCAGCCGCTGATTGCCTTTTTAGAAATTATTAAGTCGAGTAAAGATGGACTGGTTTTTGATAAACGGCTTGAGAGCCAGGTATTATTCTTTGAGGAATTTGTTTCCACCGTTTGATTGCATACGATTCTTAAGTGGACGGTTGTTTTAAGAAATTATTATCGTTATAGTTTCATGATTTAAAGTATTTGCAGGTATTTACTGAGATATTTCTTAACTACATAATTCATAATGCAAATTTAGCCATCAACTTCATAATGCAATTATAAACATTTTATGTGTATTAGTTCGAACATGAGCATAGCGTGATTTGACTAAATAATAAACTAAATCTTGAAGCTAAAATTTCCAAGTTACAAACTTTTAATTACGTAATATATTATATACTTATATAAGAAGAATAATTTTAAGAATATTGTGAATACGTGTGTGAAACATGTTTTCTTTTCATAAATTTAAGAAGAATAAATTCTTTTGTATTATTCGCAGGAAACCTCGCTATATAAAAACACAGTACGCCGCCACGTGGACCTGAAAACAATCCAAAACCGAATCGGGACCGTTGGATACAGACGTTTAGAGTTCTTCCGTGATCTGCTGCTCCTTTGCAACAACGCAATAGTCTTCTATCCTAAAAACTCAGCAGAGTCAATCTCAGCCGTCCGTTTACGCGCACTAGTCAACAAAGAAATGACCCCCAAATTGCGCAAAACCCCTCGACATTCTCCGCAATCGCAAAAGGAACCAATCAGGCCGAAGGCGATTACAGTCCAGCACCAAAAATCTGCCACGTCGGCAGCACCATTAGTGGCATGTTCTAAACGGGGCTCGTCTAAACCCGTTAAGAAGGAAGAAGCGGAAGTGACGGAGAACGGGAAGGAAAAGAAAGAGGTTAAGCAGAAGAAATCAAGAGGACTGCGGACTTTCAAAGGGCGAGGGAAGAAAGCAGGGCCTGCGATGAACCCGAAACCCGAACCCGAAATAACAGAGAGGGGAGAGAAGGTAGATAACACAAAGAAGAGAGGGATGAACTTTTTGAGCAGATTGAAGAGTGGCCCTGCTTCTACTCATGAAAACGTGGGGGTGAATAGTAAAAATGTTGGTGTCAAGAAGAAGGGGAAAGAGGAGGGTAGAAAGAAAGAGATGGGCGTCAAAAGAAATGTTGGGAGGCCGCCGAAGAGGGGAGGGAAGAGAGGGAGGGAGGAGGAGAAGGCGGAGTCGCCTGTGAGAAGAAAGAGAGGGAGGAGGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020592845.1	1.3e-54	uncharacterized protein LOC110033262
trEMBL	A0A8K0IPW9	1.1e-53	Serine/arginine repetitive matrix protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G44430.1	38.85	2e-60	231		DNA-binding bromodomain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g215233	AT2G44430.1	417	193	11	105	470	48	453	38.85	2e-60	231
g215233	AT3G60110.1	398	212	8	105	473	50	435	36.43	9e-55	211
g215233	AT2G42150.1	435	203	13	95	470	1	417	35.63	3e-49	193

Ortholog group

Species	Genes
Allium cepa	g215233.t1; g237343.t1
Allium fistulosum	AfisC4G04714; AfisC5G05582
Allium sativum	Asa5G03205.1; Asa5G03206.1; Asa5G04008.1; Asa6G05505.1; Asa6G05506.1
Arabidopsis thaliana	AT2G42150.1; AT2G44430.1; AT3G57980.1; AT3G60110.1
Oryza sativa	LOC_Os08g39980.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	107	155	38.5	8.4e-10
PF00439.22	Bromodomain	Domain	344	412	30.5	2.6e-07

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network