result

Gene information

Detail information of g21688

Location

Gene	Chr	Start	End	Strand
g21688	CHR6	261077	263463	-

Sequences

CDS

Protein

Gene

>g21688.t1
ATGGCATTCTCTATAGCACATAGTGCAAAATAGCGCAAAGTGCAGGCTTTTCGTTTACCTATGCTATTTCTAGTTAACTACGTTTCCTAAAACAGAGATTAAATGCTGCCTTATCCTAAATCTTTTCCCCTTTGTAATCCCCTTGTAATTTTGTGTCGATCAATTTTTCGTATTTTTTTTATTGTTTTAACTGGCAGACAACGAGAAAAGGCCCAAAACCCCAATCTGCAATCTTTCTATGCTCAGTTGTCCTCGACCATCTAATTTAGTTGCTTCAATAATGGCGGATCCGGTTGCTACCAACAAACCACCGATTGAAGCCAAAACCCGAAAGGAAAGAAGAAAGTACCTGAAAAAGTTGAAAAGAAAACAACTTCGCAAAGAAGCAGCAATAAAATATCGTGCAGAAGAAGAAGCAAGGCTGAATGATCCTGAAGAACAACTAAGGATAAAGCTAAAAGAGCAAGAAGAGGCTGAACATACCGAAAGAGGGAGAAGAGAGTTTGAGGAGCGAGAGAGGCTATGGATCCAAGCTGCAAATAAGAGGAAGCAGGAGGAAGAAGAAAAACAAAAGAATATTTTAGAACATACAGACAAGCCTAAGGTTTTATTTTTGAACGATATAGTTTGTTTCCACTTATGCAAAACATACATTTTTCATCATAAGATTTTTTTTTTCCCCTTCAGAAAGGTAGAATCAACTTCTTTACGTTGGCTTATCAAGTCATTATTCTGGTGCATTATTAGTTATGCCTTTTAAGTTATCATTTAGGCCATGTTTGGGGACAACTTATAAGTAATTACGTATCAGCAACTTATTAGAAATTTTAAGTTATGAGCCATAGGGTACTATTTATTAGTTATCGTACGGAAACAACTTATTTCATCTCCTTTTAGCTTAAAAGCGACTTCCTGAAATAAGGGTTTTGTGAACTCTTATATTCTGACTTATATGCCATTCTTCTTTATATTAAAAACAACTATTTCTTGTGGTTGACTCAATTAAAACTTGATCGAAATAATTTTTAAGTCATTATTTGCATAAACTTACATCTCCTTCCACTATAAATCAACATATAAGTCAATATTTGTTACCAAACTCTTTTTTAGAGAAGTAGCTTAAAAGCAAAAATACCTTGAAGTGGTTCCAAATATTCTGCAGTGCAGTTACTTTTATCAGAAATAACGTGAAAGTCATTTTAACTGGCTATGAACAAACAATTCTGGTAATGCGTTATGGTTCCTTCTGTAGGTTTGAAATTTTACCTGTTTGAAGTTAAGAATAAAGTTCTCACTTTTCAGCATTAATATCAAGTAATACGTTCTTCAAATTTACATGTAATAACAATCAGAAGAGTAATGTACCATAAATGTACCAGTATAATAGATTGCAACATAATAATATTCTGTTTCTAGTTCATGAAAAATACACAGTTTATCAGCAGTTAGCCCCCTTTTAAAACACTGTGTATTCTCTATTTCCTTGTGTATTTATAATCCAACAGGCAGAAACTGCAGCTAAGTTAGAAGAAGATGATGAATGGGACTATGTTGAAGATGGTCCTCCAGAGATCATCTGGCAAGGTAATGAGATCATTATTAAAAAGAAGAAGGTTAAAGTTGCGAAGAAAAGTATTGATAACGAACCTGAAAACAAGGTTAGAACTTTTGATCCCAGTTTCACACATCGAAGCGTATTATTTGATTTTCTTACTGTATTTAATAGAAATTTGAGCATTATGTAAGTGTACTACCGAAAATATTTTACAGGATGTTGATAGACCTACATCAAATCCACTTCCTCCCCAGCCTGTAGCTTTTGCTTCTTACAACAAGGGGCTAGTACAAGATGTTCTCGACGACGTTGGTCAGGAAGTTCCAAACTTTGGAACTGAACAGGTATACCTAATCATCTCAATGGATATTGTGCTAAGTTCCTTAACTCATACATATTTTTGTATTAGACCCTGATAAATCTCATTATATTATTTGAAGTCAACCAAAGGACCGTGCTACCCTTGCATATTGTATCCTAGTACTGCAAGCGGTTTTGAATTGTAAAACTGCTCCTTTTTTTCTGTTTTTTCCCCAAGGATCTTACAATGGATTATCAGATTTATAAAATGTAGGTTTTACATAAAATTTTAAAAATAAAGCCCAAGCCTATTTATTTATGAGCACACTTTTTTTTGGCAGGATAAAGCTCATTGCCCTTTCCACCTCAAGACCGGGGCATGTCGATTTGGCACTCGTTGCAATAGAGTTCATTTTTATCCTGACAAGTCTTGCACGCTGCTTATAAAGAATATGTACAATGGCCCAGGTCTTGCTTGGGAACAAGATGAGGGGCTCGAGGTTTGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253770.1	2.0e-61	zinc finger CCCH domain-containing protein 16
Swissprot	Q9SY74.2	6.0e-50	Zinc finger CCCH domain-containing protein 5
trEMBL	A0A5P1FG69	1.5e-61	Zinc finger CCCH domain-containing protein 5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10320.1	56.87	9e-72	266		Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g21688	AT1G10320.1	262	92	5	51	291	34	295	56.87	9e-72	266
g21688	AT5G42820.1	49	22	0	233	281	9	57	55.10	4e-11	65.5
g21688	AT5G42820.2	49	22	0	233	281	9	57	55.10	4e-11	65.5

Ortholog group

Species	Genes
Allium cepa	g157509.t1; g21688.t1; g21691.t1
Allium fistulosum	AfisC4G05717
Allium sativum	Asa5G04718.1
Arabidopsis thaliana	AT1G10320.1
Oryza sativa	LOC_Os02g35150.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	241	261	24.9	1.2e-05

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000375	P	RNA splicing, via transesterification reactions
GO:0000377	P	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0000398	P	mRNA splicing, via spliceosome
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0008380	P	RNA splicing
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0030628	F	pre-mRNA 3'-splice site binding
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0036002	F	pre-mRNA binding
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0071704	P	organic substance metabolic process
GO:0089701	C	U2AF
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1990904	C	ribonucleoprotein complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network