result

Gene information

Detail information of g217873

Location

Gene	Chr	Start	End	Strand
g217873	Scaffold_53266:HRSCAF_436352	669104	670846	-

Sequences

CDS

Protein

Gene

>g217873.t1
ATGTTGGCAAATCCTCCTGCTCAGGAGCTTGTGGCAAAGGATCTACATGGGAATGAGTGGACATTTTGCCACGTTTATAGAGGTATTTATGATATTTTAAAGAACATATAGACTTATCAAGTTTTTAAATTAAGTTTTTGCTCAATATGTTCATATCATTGCTTCATGGGTCAAAATTATGTGTAACTTACTACTATTGTCAAAATTAGTACTTCTTTATCACGTCCGAGGAAGGGTTGGTTAGCGGATGAAAATTTATTGCTCAGACTTCAGCATAGTTATTTTTAGTAACTTACATAATGGTTTAACTTTCTTGTTTGGTATTAGGGGAACCAAAAAGGCATATGCTCATGGCTGCTGAATGGAGAAAATTCACGAAAGAAAAAAGACTTGTTCCAGGCGATGCTTGCATTTTCGTTAGGTGTTACTTATTCACTATATAAATATCTGAAAGTTGTGTGACTGTGACTGTAACTGTGACTGTGACTATATAGCTTTATTTGTAAATTTTGTAGAGGAAGAGATGGTGGCTTATATATAGCAGGTCGCCGTGCAAAAAGGCCTGACAACTCTGTAATGCCGAGAAATGTGTCTGTACAAAGCATGAAGATTGGTGTACTTGCATCTATACATCATGCTTTATCTTCCAGAACTGCGTTTACTGTCTGTTATAGACCTAGGTATTTTGTGATGCATTTCTTAATTTTGCATCCATATGAGACTTCAAAATATAATGGTTATATGCTGGTTTTGTTTATGTTTGTTAGATCTAGTACTTCGAGCTTTATAGTTCCATACAACCGGTACATGGAGTCATTAAAGAACCGTACAGTGCACATGAAATATACGATGAAGTATGAAGCAAATGATTTCCAAGAAGAGAGGTAAATGAATTTTTGAACTATATTTTATATTTGAACATGCTATCAACATTCTCAGTTTTTTCACTTCTGTTAAAATGTAGGCTTACATGTGTAGTTGTTGGAACTGAAGATTTAGAACCGGCAGTGTGGCCAGGTTCTATGTGGAAGTGTCTAAAGGTGATCGAATTTTTCTTCTTATTGACTTTATTATACTGTACTACATGATATAGTGCAAAATTGATAATAGGGTAAAACGGTTGGTCTTAAAGCCAATTACTTTGGTTTCAGCTTTTCTCTAGGCATAATAAAGACTAAAAAAAAAAAATAGAGAACATGACTCATATGTTTAACAGGTTAATTGGGCTGATAGCGAGAGGTATCGGGGGCCAGAAAGAGTTTCACCTTGGGATCTGTTTCCATTGCCAACCCAGTCGGGAGATTCATTGAATAATACTCGAACAATTAAACTGTTCGGTTCTGATATTGTTCAGTGTGCAACCTCTATGAGTAATACTTCATCTGCTTTTGCATCCGAAGCTTCAACAAATATTGCAGCACAGCAAAGAATGATGCACCCTGTCAATGCTCATGGATTCTCCAAGGTGAAATTTAACCTAATGGAAAAAAGCAACAACAATATCTTTGTATGGAGAGGGATTACATTTGGTAATGATGATTGATTTAGGTGCTTAAATATGGGGCAGCTGGTGTAAGAAAGGTTGACCTCTCCAAATACAGTGGATATTCTGAACTTGTTGAAGTGCTGGATAGGATGTTTGGTTTTGAAGGAAGTCTGATGTCTCAAACTGGCGGCTGGGAAGTTGTTTACCAGAATGATAATGGTATTTTAAATTTGGCTTCTAGATGCCTATGGCTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274071.1	1.7e-61	auxin response factor 23-like isoform X3
Swissprot	A2ZET6.1	1.7e-53	OsARF1
trEMBL	A0A2P5BT09	7.3e-54	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62000.1	42.64	6e-54	207	ARF1-BP;ARF2;HSS;ORE14	auxin response factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g217873	AT5G62000.3	265	141	4	1	264	195	449	42.64	6e-54	207
g217873	AT5G62000.3	125	79	1	207	324	676	800	31.20	3e-09	59.3
g217873	AT5G62000.2	265	141	4	1	264	195	449	42.64	6e-54	207

Ortholog group

Species	Genes
Allium cepa	g217873.t1; g32989.t1
Allium fistulosum	AfisC2G04430
Allium sativum	Asa2G00230.1; Asa6G02049.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	8	71	39.5	3.6e-10
PF06507.10	Auxin_resp	Family	98	178	80.3	8.1e-23
PF02309.13	AUX_IAA	Family	239	293	26.8	3.7e-06

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0005488	F	binding
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0007568	P	aging
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009835	P	fruit ripening
GO:0009836	P	fruit ripening, climacteric
GO:0009909	P	regulation of flower development
GO:0009911	P	positive regulation of flower development
GO:0010154	P	fruit development
GO:0021700	P	developmental maturation
GO:0022414	P	reproductive process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042803	F	protein homodimerization activity
GO:0046982	F	protein heterodimerization activity
GO:0048518	P	positive regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048582	P	positive regulation of post-embryonic development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0051094	P	positive regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071695	P	anatomical structure maturation
GO:2000026	P	regulation of multicellular organismal development
GO:2000241	P	regulation of reproductive process
GO:2000243	P	positive regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network