result

Gene information

Detail information of g218297


Location
GeneChrStartEndStrand
g218297Scaffold_53309:HRSCAF_436395114882158425-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010912212.10.0e+00DNA repair protein RAD5A isoform X1
SwissprotQ9FNI6.10.0e+00RAD5 homolog A
trEMBLA0A6I9QMJ60.0e+00DNA repair protein RAD5A isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G22750.162.910.01320RAD5;RAD5ADNA/RNA helicase protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag218297.t1
Allium fistulosumAfisC2G08070
Allium sativumAsa6G01424.1
Arabidopsis thalianaAT5G22750.1
Oryza sativaLOC_Os02g32570.1; LOC_Os02g32570.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08797.8HIRANDomain18724337.51.5e-09
PF00176.20SNF2_NFamily372753288.45.3e-86
PF13920.3zf-C3HC4_3Domain80685239.92.6e-10
PF00271.28Helicase_CFamily87999157.21.6e-15

Gene Ontology
AccessionOntologyName
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0000725Precombinational repair
GO:0008152Pmetabolic process
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0006310PDNA recombination
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0008150Pbiological_process
GO:0009292Pgenetic transfer
GO:0009294PDNA mediated transformation
GO:0009987Pcellular process
GO:0033554Pcellular response to stress
GO:0034641Pcellular nitrogen compound metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044764Pmulti-organism cellular process
GO:0045003Pdouble-strand break repair via synthesis-dependent strand annealing
GO:0046483Pheterocycle metabolic process
GO:0050896Presponse to stimulus
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0071704Porganic substance metabolic process
GO:0090304Pnucleic acid metabolic process
GO:1901360Porganic cyclic compound metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15505RAD5; DNA repair protein RAD5EC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.