result

Gene information

Detail information of g218439

Location

Gene	Chr	Start	End	Strand
g218439	Scaffold_53328:HRSCAF_436414	64824	66501	-

Sequences

CDS

Protein

Gene

>g218439.t1
ATGTCATCCTCCTCAACCACCTTTTCTTTGGAGCACTTCTCTCCTCCTCCTTCAGAGCAACTCTGCTATGTCCACTGCAACTTCTGCGACACCGTTTTAGCCGTAACTATTTTGTTTTGTTTTTCTTTATAAAATATTAGCAGCAGTAATGGTTAATTATGAGTTATATTATGCAGGTGAGTGTTCCATGTAGCAGTTTGTTCAAGACAGTGACAGTGAGATGTGGTCACTGCACAAATCTTCTGGCTGTTAACATGAGAAGTTTGTTGCTTCCTGCGACAAATCAGCTTCCATTTCCCCACTCCTTTTTGGCTCCTCATCATAATCTCTTGGTATTCTTTCTTCAGTTCAATTAATTTTTGTTTATGGTTTTTTTGTTTTTTGTTTTTTGTTTTCTAGTTTTAGTTTTTTTTCCTTTAATTTCGTGTTTGAAATATGTTTGGTGCAGGATGAACTTGCATGCCAGGCGCCACCAAGTTTGCTACTGGATGCACCGAACTTGCACCACAATAATTTTATGCCGCCTTTACCGAAAGGAATTGAAGAAGAAAGAGCGCCGCAGATTAACACAGTTAATGTTAATAGACGTACGTTTTTTTCTCTTTTTTTCAAAAAATGATTTAACTGAAAAGAGTTGTAGAAATTCAAGATTTAAGAAGGATTTTTCTGGGTTTTATGTTAGAGAATTGATTTTGGGATAAAGAAAAGAAAAAGAAAATAATAATAACAATTTTAGTAAATATTTAAGTTTCTGATTTTATGCTGTTGTGAAACAGTACTTGATCTTACTCTTCTTTCTAGATGCCTGCAACTTGTCCAAGATCCGCCATACATTGACTAATCTTAGTCTATGGTTTTATAAGTGATTAAACACTTCTAACAGTTTATATGTTTATTTTCTTTTTGTTTTACGTTGTTGAAGTTTTTACTGATATTTAAATTGATGGGCAGCTCCTGAGAAAAGGCAAAGAGTTCCTTCAGCTTACAATCGTTTCATCAAGTATGAAAAATTCATGCCAACTGATAATTAATTAGTTAGAATTTAAATTTTAAAAATATTTCTGTGATTTATTGCAATTTTAAATGAATCCAGGGATGAAATCCAGCGCATCAAGGCTGGGAATCCAGACATTACACACAGAGAGGCTTTCAGTGCAGCAGCAAAGAATGTAAAATTCCTCAAAAGTTTAAAATTTTTAGATCTTTCAATTTTGAATTTTGATACTTACCTCTTTTTTTTTTTTTTAACAGTGGGCACACTTTCCTCACATCCAATTTGGCATGATGCATGATCAGAGTATGAAGAAGAACAACATTCGCCAGCAGGTTAATTGATCAGTTAATTAATTGCATAATAGTTAATTTAATTACGGGATCCTATTTGTAAACAACAAAAAGAAAAATAAGCTGCAAAAAATGAAGCGAGATGCAATATAATTAGCACTCTTAGGAATCCAAAACCCTAGTTTGATTAAAGCTGCAAGCTGCAGCCACCTCTATATTCAGATTTTAGGCTTCAGCTTTTTAGTAATTTCAACCTGCACATTCATTCATATGAATTACTCCATTTGGCTATTCAATTTATAAAATTAAATTTTGGCAGGAAGGAGATGATGTTATTATGAAGGATGGGTTTTATGCAGCTGCAGCAGCAAATTTGGGGGTCACTCCATTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008787013.1	2.1e-90	protein YABBY 4-like
Swissprot	A2X7Q3.1	1.4e-67	OsYAB7
trEMBL	A0A8B7BWW4	1.5e-90	protein YABBY 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45190.1	61.54	6e-66	246	AFO;FIL;YAB1	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g218439	AT2G45190.1	221	73	8	9	223	15	229	61.54	6e-66	246
g218439	AT4G00180.1	228	75	9	11	221	17	238	57.02	4e-56	214
g218439	AT4G00180.2	211	75	8	28	221	1	207	54.50	8e-47	183

Ortholog group

Species	Genes
Allium cepa	g218439.t1
Allium fistulosum	AfisC5G03416
Allium sativum	Asa0G05548.1; Asa3G02304.1; Asa6G04305.1
Arabidopsis thaliana	AT2G45190.1
Oryza sativa	LOC_Os02g42950.1; LOC_Os02g42950.2; LOC_Os04g45330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	17	185	232.5	3.3e-69

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001708	P	cell fate specification
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0040007	P	growth
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009909	P	regulation of flower development
GO:0009933	P	meristem structural organization
GO:0009943	P	adaxial/abaxial axis specification
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009955	P	adaxial/abaxial pattern specification
GO:0009987	P	cellular process
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0010450	P	inflorescence meristem growth
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035266	P	meristem growth
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045165	P	cell fate commitment
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048444	P	floral organ morphogenesis
GO:0048449	P	floral organ formation
GO:0048507	P	meristem development
GO:0048509	P	regulation of meristem development
GO:0048532	P	anatomical structure arrangement
GO:0048580	P	regulation of post-embryonic development
GO:0048589	P	developmental growth
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065001	P	specification of axis polarity
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1902183	P	regulation of shoot apical meristem development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000024	P	regulation of leaf development
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0090706
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network