result

Gene information

Detail information of g220322


Location
GeneChrStartEndStrand
g220322Scaffold_53560:HRSCAF_436646181404185444-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268794.15.8e-204protein FAR1-RELATED SEQUENCE 6-like isoform X2
SwissprotQ9SSQ4.14.5e-76Protein FAR1-RELATED SEQUENCE 6
trEMBLA0A8B8Z8034.7e-163Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G52520.134.431e-75 281FRS6FAR1-related sequence 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag169381.t1; g220322.t1; g319040.t1; g407447.t1; g526489.t1
Allium fistulosumAfisC2G08767; AfisC5G00935; AfisC8G04131
Allium sativumAsa6G00753.1
Arabidopsis thalianaAT1G52520.1; AT1G80010.1
Oryza sativaLOC_Os02g39520.1; LOC_Os02g39520.2; LOC_Os02g39540.1; LOC_Os02g39540.2; LOC_Os03g62660.1; LOC_Os03g62660.2; LOC_Os04g40060.1; LOC_Os07g31420.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03101.12FAR1Domain3111554.41.4e-14

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0007602Pphototransduction
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009581Pdetection of external stimulus
GO:0009582Pdetection of abiotic stimulus
GO:0009583Pdetection of light stimulus
GO:0009585Pred, far-red light phototransduction
GO:0009605Presponse to external stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009639Presponse to red or far red light
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010017Pred or far-red light signaling pathway
GO:0010018Pfar-red light signaling pathway
GO:0010218Presponse to far red light
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023052Psignaling
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0042752Pregulation of circadian rhythm
GO:0042753Ppositive regulation of circadian rhythm
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051606Pdetection of stimulus
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071214Pcellular response to abiotic stimulus
GO:0071478Pcellular response to radiation
GO:0071482Pcellular response to light stimulus
GO:0071489Pcellular response to red or far red light
GO:0071490Pcellular response to far red light
GO:0080090Pregulation of primary metabolic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K17604ZSWIM3; zinc finger SWIM domain-containing protein 3EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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