result

Gene information

Detail information of g220774

Location

Gene	Chr	Start	End	Strand
g220774	Scaffold_53612:HRSCAF_436698	140444	142108	+

Sequences

CDS

Protein

Gene

>g220774.t1
ATGGGATGCAATGGCATGCCATCTTCGTTTTTCCCTCCGAAGTTCTTGTACCAGATGCAACTATCTCCTATTGAAGAGAATCATCATTTACTTCCAACAATGCCACAAGACTTTAGAGGTAGATTTATATATTTTTTGCTTGGACCCATATGTTTCAAAATCGAATGATGTACTCAAATCTTTTATAGGTGTAGCATCAATACTTGGAAAAAGATCAGGTATGACCTTTGATGATATGGGCGGCGAGGATGAGCTTTCAGACGATTCTCAAGCAGCGGAGAAGAAAAGAAGATTGAATCTTGAACAAGTAATTATCACAGAGTTCATTTTTGACACTGTTTCATTGGTATATTGCAAGATTTTCATTATTTCTATACATATGTGTGTGTACTTACAGGTGAGGACACTAGAAAAGAATTTTGAGATTGGAAATAAGCTCGATCCGGAAAGAAAGATGCAGTTAGCTAGAGCGTTAGGAATGCAACCAAGGCAAATAGCAATTTGGTTTCAAAATAGAAGGGCTAGATGGAAAACTAAAAAATTGGAAAATGATTATGAGGGTTTGAAAAGGCAATTTGATATTGTTAAAGCAGAGAATAATGCACTTCATGAACACAACAAAAAATTACAGACTGAGGTAAAAACATTGTGAACTTTTGGTTTCATTGATTCAATCTTCTTTATTTATTTATTTATTCTATCATACATATCAAATGAATAAGTTTAATGCTGAGATAGTAAAACTTAACACTTTACATAATGAATTACTTTTCAGACAATGCAATAATTGATTACGAATAAAGGAATTGACTTTGATTTTCTTCCTTGAATTGAGCATGATTCAAAGAAGAAAAATAAAATAAAATAAATCTTGGCATTATCCTACTGTTTGTTCTCTCTTCAAGATGTATGGTTGGACTCTAAAATGGAGATGCAATTTTTATTTCACAAGCTAACAACTTAATCATCATCATGGAGAATTTCAAAAAAATAATACTATTTCATTCATAAAAGAGATATCTGAATTCACATTTGCATATCCACTCACTGTTATTGAGCATTGAAGGAAGCATCTTTGTTAGTTTTGCTTTCAAGACATAAGTAAACGAACTATTGAACAGTGGAAAAAGTTCTTCATGGTTGATAATAAAGGGAAAAAAAAAACACTGATGAGTTATTAATTGTTGAAACATTCCCGTTTTCTAAACTCTAGTTATGATTCCATATATTTGATGATTAAGTAGTTTAAGACATAAATTTACTTACTGCATACCCAAATAGATCTTAATATTTAATCATGTTACTGATTGTTAGCTTTTACAGTTATTTGCACTGAAAGGGAGAGAAACAATAGAACCTATCAATCTAAACAAAGAAACAGAAGGCTCTTCGAGTAATAGAACTGAAAATAGCTCAGACATCAACTTAGAAATTTCAAGAATGCAGCATGCCACCGATAGCCCTGGGCATGGCAATGTAAATCAAGGTATTGCATTTTTTCCTTCTTATAAACAACAAGCTATGACTCAACTCATTCAAAATTCTATGAAGAACGAACATGGTTACGCTACCACTGTAGAAGAGAACTTATGCAACATTTATGGAGGAATGGATGATCAATCTTCGGCATTCTGGGCATGGTCAGAACAACATAATTTCCACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008804470.1	4.1e-72	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03.2	2.9e-46	Homeodomain transcription factor ATHB-13
trEMBL	A0A835DLE0	4.0e-77	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69780.1	52.81	1e-70	262	ATHB13	Homeobox-leucine zipper protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g220774	AT1G69780.1	303	103	14	1	272	1	294	52.81	1e-70	262
g220774	AT1G26960.1	280	113	10	1	272	1	255	47.86	9e-56	213
g220774	AT3G01220.1	217	88	6	59	267	72	275	49.77	7e-49	190

Ortholog group

Species	Genes
Allium cepa	g220774.t1; g534426.t1
Allium fistulosum	AfisC1G05115; AfisC1G05155; AfisC4G00743; AfisC6G00907; AfisC6G03771; AfisC8G00441; AfisC8G03331
Allium sativum	Asa1G04397.1; Asa1G04399.1; Asa4G00762.1
Arabidopsis thaliana	AT1G26960.1; AT1G69780.1
Oryza sativa	LOC_Os03g07450.1; LOC_Os10g26500.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	71	124	56.3	1.9e-15
PF02183.15	HALZ	Family	126	166	42.4	5.4e-11

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0001101	P	response to acid chemical
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009790	P	embryo development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009739	P	response to gibberellin
GO:0009743	P	response to carbohydrate
GO:0009744	P	response to sucrose
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0009965	P	leaf morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010033	P	response to organic substance
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033993	P	response to lipid
GO:0034285	P	response to disaccharide
GO:0042221	P	response to chemical
GO:0043565	F	sequence-specific DNA binding
GO:0048316	P	seed development
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048598	P	embryonic morphogenesis
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048825	P	cotyledon development
GO:0048826	P	cotyledon morphogenesis
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080022	P	primary root development
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090698
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network