result

Gene information

Detail information of g220886

Location

Gene	Chr	Start	End	Strand
g220886	Scaffold_53631:HRSCAF_436717	184102	186407	+

Sequences

CDS

Protein

Gene

>g220886.t1
ATGGACATGATAAATTCACAGTTAGTACCGCCTGGGTTCCGTTTCTATCCTACCGATGAAGAACTTGTAGGCTACTACTTAAAAAAGAAAGTTGATTCGAAAAGGATTGACCTTAATGTTATCAAAGATGTCGATTTGTATAAGATTGAACCATGGGATCTTCAAGGTACTTGCCTCATCATATTTATCCTATTGCTGAATTTATTTAGTTTTTCATTCATTAGTTTGCAAAAAATATATTTCATGTTAACCTCAATATATACATATGGTATGAATCATTTCGTGCAGTGTTTTCTGTACTTTTTTGTTTTGTTTTTCACCATAACCTAATTATCTTCAAAATTAGTGCTGGCTACTCAGATCAAGTTCATCGATTTGCTAGCCATATGGCTCTTGACTACTCTTTGATGATACCTAGTGTCCATTTTGACACTTCCCTTAGAGGTTCATGAATATTAGGCATCTTAATTTGATTCTTAATTGTGAAATCTCTTATAACTAATAGATATATTTAGTAAAATCTTCTAAAAAATTATAGCATCTTAGCCTGATCCTCCAGAGTTTTTGATAACCAGAACTTGCAGATAGATTGCATTGTCATTAGTCATATCGTCCCTAATTACATGTGTGTGTGTTGTTAATCAGAACTATGTCAGATAAGCACAGAAGAACAGACTGAGTGGCACTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGAACTCGCACAAATAGGGCAACAAAAACCGGATTCTGGAAAGCAACAGGGAGGGATAAACCAATATTTTTGAAGCACAACTTGATTGGCATGAGAAAGACATTAGTCTACTATGTTGGCAGAGCACCAAATGGACAGAAGACAGATTGGATAATGCATGAATATCGACTTGAAACCAACGAATATGGAATTCCCCAGGTATATATGAGTTTAGAATAACTTCATATGAATTGATATGTGATCGAAGAAAACATAAGCTGTAATATGTGTTCTAACATGTGCTATAAAATAGAAAGTAGCTATTATATAACATAGAAAATAATCAGAATATTTCTACCAAATGTTCAACTTGTAAAATTGATTTTACATGTTTCTAAATTATCTTGTAATTAAATGCCAATAACATTATATTGAATTACTTAGCATAATAATGCACAGATATTTTAGACAATTGTAATAGAACCTTCTGTCTTCAAACTTTGTGTCCATTTTTTGTCATGGCGATCCCAATCATTAATCTTTATTTTATTTAATATCAGCAATGTGGTTTAATAATAATTTGGATGGCAGAGATATGATTGTGCATATAGGGACACTCAGACACATATGGATTGCCATATAAACAACACCTTGCATATAAGAAGGGATATGTTAACTTAAAATTGAACAATGGTATTTAATTGCTTGTGAAGTCCCTTCTCTTATTAAGGATGTCATTTAAATGTGTAGTAGTCAAGAAATTATGATAAGAACTGTGTTCTTTTCAAGTTACAAGACAAAAGTATGAGTATTATCAAACAAGATCAAAGATAAGTGATTGTATCGCTAAAATATATATAGTATATGTATCTTATAAGCAGCAAAATGTCAGCAAAACTTAACAATGGTCAAATATCAAACCATGACAATATATTCATTTGCTAATTGACTGAAGTATATATGCTATGTGCTCCTAACAAGTTTATGGACAAGGTCCGATTACCTAGATAGTTATCATTTTAAAATCAATCTCAGTGTAGATAGAATGCGACATTTGATACTCATCATACAATTATGTTTTGATTCTCACATAAAACTGAAAATTTTGGGCGATATATTTTATTTTCATGTGCTACAATAATACTCTGGTATTAATTTCTCTTAATATGTATGGCTAGCTAGCCAAAAATGGCAATTTTTTGGTAAATAAGTACAGTATTTCATAGTTGTTAAATTTTCTCATATTAATTACAAAACTCTTGCAATATATAGGAAGAAGGCTGGGTGGTTTGCAAAGCATTCAAGAAAAGAGTACCAGCCTTAAGGAAACATGATCAACATGCTGATCCTTCACAGTACTTATTTGACGACAAACTCTTCAATCTCATTCCGGAATTTGATTTGCATAGTTCAAAACCTAATAACGACAATTATACATTTATTGACGACTATCCTTTTGAGAGGGAAAATATTGTTGATCAAATGTTATCCAGCGATGTAACGGATTGGAGGGAGCTCGACAAGTTTGTAGCATCTCAGCTTAGCCACGATGATACTCATTTTTCAAATGCTTCTGCCTCAGCAATCAATTTAGCAATGAATATGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK59055.1	4.0e-85	uncharacterized protein A4U43_C08F2500
Swissprot	F4HYV5.1	7.8e-78	Protein VASCULAR RELATED NAC-DOMAIN 5
trEMBL	A0A834GP27	1.9e-81	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62700.1	73.63	6e-80	293	ANAC026;VND5	Arabidopsis NAC domain containing protein 26

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g220886	AT1G62700.1	182	46	2	9	188	7	188	73.63	6e-80	293
g220886	AT1G12260.1	186	57	0	9	194	7	192	69.35	2e-79	291
g220886	AT2G18060.1	179	55	1	1	179	1	178	68.72	8e-73	270

Ortholog group

Species	Genes
Allium cepa	g220886.t1; g246110.t1; g297082.t1; g339350.t1; g417.t1
Allium fistulosum	AfisC1G04162; AfisC2G01067; AfisC2G08262; AfisC5G03408; AfisC8G02567
Allium sativum	Asa3G02305.1; Asa5G00103.1; Asa6G01072.1; Asa6G01073.1; Asa7G04928.1
Arabidopsis thaliana	AT1G12260.1; AT1G62700.1; AT1G71930.1; AT2G18060.1; AT4G36160.1; AT5G66300.1
Oryza sativa	LOC_Os02g42970.1; LOC_Os03g03540.1; LOC_Os06g01480.1; LOC_Os08g01330.1; LOC_Os10g38834.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	10	137	97.1	7.5e-28

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010087	P	phloem or xylem histogenesis
GO:0010089	P	xylem development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043565	F	sequence-specific DNA binding
GO:0044087	P	regulation of cellular component biogenesis
GO:0044089	P	positive regulation of cellular component biogenesis
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048759	P	xylem vessel member cell differentiation
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1901363	F	heterocyclic compound binding
GO:1903338	P	regulation of cell wall organization or biogenesis
GO:1903340	P	positive regulation of cell wall organization or biogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1905177	P	tracheary element differentiation
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network