result

Gene information

Detail information of g223860


Location
GeneChrStartEndStrand
g223860Scaffold_53993:HRSCAF_437079945184945973+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_006652591.12.5e-30PREDICTED: B-box zinc finger protein 20-like
SwissprotQ9LQZ7.13.1e-25Protein SALT TOLERANCE HOMOLOG 2
trEMBLJ3LZZ71.8e-30B-box zinc finger protein 20

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G75540.141.673e-36 148AtBBX21;BBX21;LHUS;STH2salt tolerance homolog2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag223860.t1; g273357.t1; g369151.t1
Allium fistulosumAfisC1G00527; AfisC1G02680; AfisC4G06255; AfisC6G06905; AfisC7G00559; AfisC7G01003
Allium sativumAsa1G02255.1; Asa7G05595.1; Asa7G07734.1; Asa8G03512.1
Arabidopsis thalianaAT4G39070.1
Oryza sativaLOC_Os02g43170.1; LOC_Os02g43170.2; LOC_Os04g45690.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00643.21zf-B_boxDomain34429.74.9e-07
PF00643.21zf-B_boxDomain6010124.32.3e-05

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009639Presponse to red or far red light
GO:0009640Pphotomorphogenesis
GO:0009641Pshade avoidance
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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