result

Gene information

Detail information of g224385

Location

Gene	Chr	Start	End	Strand
g224385	Scaffold_54039:HRSCAF_437125	613	2610	-

Sequences

CDS

>g224385.t1
ATGTTCTGGAAAATCCTAAAATTCAGTATATCCCTCTTCTTTCTTGCAAAGCTTGCATCTTCAGGTGATTCAAACTTCACTCTCAATGGCTTCAGCAGTAAAAACCTCAAACTTGACGGCACGGCCTCGATCAAAACAAATGGCCTTCTTGAACTTACAAACGCCACTTTGTCAAAAGGCCATGCTTTTCATCCAACTCCTCTCCGCTTTTTATCCGAATCCACCAACAAAACCCTCTCCTTCTCCACCACTTTCATCTTCGCCTTGCGCCCTGAAATTGTCTCCTACCTAGCCGGCAACGGAATCGCCTTCTTCCTCTCCCCCACCACCGATCTCTCCTCCGCCACGGCCATCCAGTACTTGGGCTTATTCAACACCACCAACAACGGCAACCCCGACAACCACATATTCGCAATCGAGCTCGACACCATCCAAAACCCCGAATTCAAAGACATCAATGACAACCACGTCGGAATCGACCTCAACAGCTTGACTTCCACCAAGTCTGCCCCTGCCGGCTACTACGATGACACCACCGGTGCTTTCAATAACCTAACTCTTATTTCCGGTAAATCAATTCAAGTCTGGATGGATTACAATGGCACCAATATGAAGCTCGATGTCACTCTATCCTTGATCCCAATGTCAAAACCTAAAAAACCCCTTTTATCGACTGTTGTGGATCTCTCTAGCGTGCTGCTTGAATCCATGTTTGTAGGACTTTCTTCGGCTACAGGAAGTTATCAGAGGTCGACTTACATACAAGGATGGAGCTTCAATATGAATGGTGCAGCCAAAGCTTTAGATTACTCTAAACTTCCTCCACTGCCTGTACTACCTAAAACCAAAAACAAAATGGCGCTGTTAGCAATATCTCTACCCATAGCAGCAACTGTGCTATTGCTTTTAACTGCTGTTGTTGTGGTGGTTGTAGCGAAGAGGAGGAAGAAATACACAGAGATAGTTGAGGACTGGGAGCGTGAGTATGGTCCGCACAGATTTTCATACAAAGAACTGTACAAAGCTACAAAGGGATTTGTAAAAGATGGTTTGCTAGGAGCTGGAGGGTTCGGGAGGGTGTATAAAGGCATACTACCCACAACTAAAATGAAGGTTGCAGTGAAGAAAGTATCACATGAGTCAAGGCAAGGAATGAGGGAATTCGTAGCAGAAATCGTAAGCATTGGCAGGCTCCGCCATAGGAACCTCGTGCAGCTACTAGGCTATTGTAGACGTAGAGGTGAACTCTTATTAGTGTATGAGTACATGGCCAATGGAAGCCTTGATAGGTACTTATACCACAAAGATGAACCCACTTTGAATTGGGTTCAAAGGTTTAATGTAATTAAAGGGATTGCGTCGGGTCTTTTGTACTTGCATGAGGATTGGGAACAGCTTGTGGTACATAGAGACATAAAGGCTAGTAATGTGATGCTAGATGAAGGTTACAATGGAAAGCTTGGTGATTTTGGACTTTCAAGGTTGTACGATCATGGAACGGACCCCTACACAACCCATGTGGTTGGGACAACAGGATACCTTGCACCGGAGCTAGCAAGAACGGGAAAGGCAACTACTGCAACGGATGTGTTTGCATTTGGAACGTTTTTATTGGAAGTAGTATGTGGAAGGAGGCCGATAGAGCCACTTTTAGTGGGAGAAGAGCTCATGTTGATTGGGTGGGTACTTGGAAAATGGCAGAGGGGCACCCTGCTTGAAGCAGTTGATATAAGAATAAGAGGAGAGTATAGTGTGGGCGAGGTTGAGTTGGTGTTGAAGCTGGGGTTAATGTGTACGGATCCAAGGGCGGGGCGTAGGCCCAGGATGAGGGAAATCGTGATGTATTTGGAAGGAGAATTGGTGCTGCCGGAGTTGCCTGTTGTTTATTCTGGGTTTACTGTTCCGACAACAATGATGCAGAGTTTTGGTTTTGACTGTAATTACTCCAGTGCGTCCATGACTGATATTTCAGCTATATCTCTGTCTGGAGGTCGGTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256322.1	2.1e-239	L-type lectin-domain containing receptor kinase IV.1-like
Swissprot	Q7XUN6.2	3.7e-196	Protein SALT INTOLERANCE 2
trEMBL	A0A8B8ZP67	1.1e-224	L-type lectin-domain containing receptor kinase SIT2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G53810.1	55.08	0.0	702	LecRK-IV.2	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g224385	AT3G53810.1	650	274	11	18	659	19	658	55.08	702
g224385	AT2G37710.1	661	280	12	19	665	20	675	54.77	684
g224385	AT4G02410.1	660	288	11	19	665	22	674	53.33	676

Ortholog group

Species	Genes
Allium cepa	g106467.t1; g106468.t1; g106470.t1; g106476.t1; g191617.t1; g224385.t1; g275048.t1; g319721.t1; g381392.t1; g418238.t1; g418239.t1; g510386.t1; g510388.t1; g510393.t1; g529683.t1; g529692.t1; g96526.t1
Allium fistulosum	AfisC1G02402; AfisC1G02407; AfisC1G05247; AfisC2G09471; AfisC3G07176; AfisC7G01324; AfisC7G01327; AfisC7G01328; AfisC7G01329; AfisC7G01330; AfisC7G01910; AfisC7G05829; AfisC7G05837; AfisC7G05843; AfisC7G05851; AfisC7G05859; AfisC7G05861; AfisC8G03404
Allium sativum	Asa0G02289.1; Asa0G05071.1; Asa2G05950.1; Asa2G05955.1; Asa2G05958.1; Asa2G05959.1; Asa2G05966.1; Asa2G05967.1; Asa3G00476.1; Asa3G00477.1; Asa3G00478.1; Asa3G00480.1; Asa7G00161.1; Asa7G00177.1; Asa7G01880.1; Asa7G01888.1; Asa7G07561.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g44900.1; LOC_Os04g44910.1; LOC_Os07g03890.1; LOC_Os07g03900.1; LOC_Os07g04110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	24	274	267.5	1e-79
PF00069.22	Pkinase	Domain	347	548	157.5	3.6e-46

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0005623	C	cell
GO:0006950	P	response to stress
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0009555	P	pollen development
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009751	P	response to salicylic acid
GO:0010033	P	response to organic substance
GO:0014070	P	response to organic cyclic compound
GO:0046677	P	response to antibiotic
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043207	P	response to external biotic stimulus
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048856	P	anatomical structure development
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0071944	C	cell periphery
GO:0098542	P	defense response to other organism
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network