result

Gene information

Detail information of g225294

Location

Gene	Chr	Start	End	Strand
g225294	Scaffold_54157:HRSCAF_437243	127182	135479	-

Sequences

CDS

Protein

Gene

>g225294.t1
ATGCTGCCAAATAATATAATGATCTCAAATGATAACGTGATAGTAGCAAATGAAACAAATGCAGAAAACTGTTCATCAATGCTGGCACACGCACTCTCCTCGAGGATGCAGTTAAACAACGATGACTCACTCCAAAATATTAACAGCTTTAGTGTTCCAAGTTCGAACCTGCACCTTCAGATGATTCATGATAATGCAACCAATAATGTTCAGTCACTTGATATTGAACATAACCAAATTCCAGAAAGTTTACATAATTACAACGCTCTTGCCATACAAACACAGGGAGCTGGTGATACTGTGGACGATGAAAGACCCAATAAGAGAATGTAAGTTTATTTATAAAGGAATATGAACCTGTGTAATAACAATGAATTAGAGCTGTGTTACATGAACGTTTGCGATTATACTTCTCTGCCACTGTATTCGAATTCGGAGGTAGAGAGTTGTTGTAAAAGTATGTTTTATAACACAAATACATTTCTGCGTTATGACCACGGTTTGAGATCTCATTTTTGGTATTCGGTTTCGGTCTTTTGTATCTTAGGAATTTCGATAAAATTCGTAAATTTCAAAATTTTCAATTCCATTTTCGGTTTCGGATCTCGTTATTTATTTTCATATGATTACACATATTTGTTTGATTTATTGAAACAAAATCAACAATTCATGCTCACTTGCAAATAAGATATAAAAGAATAATACTGATTAATTATAAATATTTACAACGCTAAAAAATGTTGATTCATTATTCCGTTTTCAACTTTTTTTTAATTACACCATTCATATATTTTGTGAATTTGTATGTTTCTTAAAAATTTTGAATTTTGAATATTCAAGTATTTGAAACTCAAGTTAATTCTTTTTTTTTGGGACTTTTCATGTAAAATTTGAAGTTCAATATAAACCGGAATTTCGGTTTGGTTTCGTTTTGGACCCTATTGAAACCTAAACGGAATGACCGGAATCTCGGTATTTCGGTCAAAACCTCTAACCTTGGTTATAACATATATTTCCTTTTCGCTAATTTATAAGATTCTTTATTTTAAATTACTCCTGCCATGAATGATCGGAATAGTATCTAACTGGTCAATTTTTGCAGATGTAACGCAGAAAGTAGTGGCAAAAATACTCGAGATAAGTGTTGCAACTGCAAGAAATCAGGGTGTTTAAAGCGGTAAGGTTCTTTCACTGTATCAATTTTTTTATCTGTAATTATATAGTGTTATTTCTTCATGGAACATTGTTTTCATTTTCTTTACGGTAATGTATCTCTATCATTATGCTATGTAATAAATTTTGAGCCTTCAATCATATGTGAAATTCATCTACTATGCTAAGATACCGCTGCATTATTATTTGTCAGCTAAGTTTTAATTTCCTGAAAATAACTAACATACTGGATTTCCAATATATTTATTAAAGTAAAATATTGTAACTTAAATTGCATTGTGATTCTGTGAAATTATGCGTGTGTTTAAACCTTATGTGACAAGTAAAAAGAAAAGCAAGCATTTTTAGGGTTTCAGCAAAGAAAATTTTGAATTGACAGGTTAAATAGCTATTCTTTGTCTTTTATTTTGTTTTTCATCTAGCAGATGCTACCTAATCGGCTAATCTCATATCCATCTCCATTAGAACCTTATACCGTTGACTATGAAAAAAAAATTACTTGACAAATAAGATTTCCTTGGATCATGATTAGTATTTTATCAAAGTGCAAGTTGCTGATTACACACACACAGTATGTGTGTGTGTGTGTATAATGTGTGCGTATGTACAACAGGGTGAAGCTCGGCACCAGCTAACTACCGATTTTTCTCATTGGTATTTCGAAGTCAAATTAACATTTAATACTAGCGTCTTTAAAAATCACATCTGTGTTACAACTTAGAGGGGACTCTAATGTGCAGCCACCTCCTAAGTGCAAAAATGTCGTGAAATTATATTGATATATCAATGAACAAATTTTCATTTTAGGCCTCCGGAAAAAAATTATTTCAAGTTTAGGTCTCGTTGGAAACCTATTATGAAAATAGATCTCTTTTTCCCTCTACAGCGTTTTTGTACATGCGCATTTTGAAAGAGCACATGTACAATTTTTCCCCTTTTTGAATATACTTGCACACTTTGAATTTGTGCAAGTACAAATTAAATTTTGTTCTTGTGCATTTTCAAAATGCGCAAGTATAAAACGCTGAATAGTATAAAACATGCCGTTTTCATGATAAGTTTCGAATGAAAATTAGACTTGAAAGAAGGTTTTTTTCGAAGGCCTAAAATGGAAATTTATCCTATATTAATTATGTATTATGTATGTAACTATGTATAATGGACATATTATGTTTTACAGATACTGCCAGTGCTTTGCTAAAGGGGACTATTGCATCAGCCCTTGTTCTTGTAATTGGTGCTATAATTCACCAGTCTACCAGGAAATAATTTCAGCTGCTCGTGCTACTATAGAATTACGAGATCCACACGCATTTGATTGTAAAGTAGTCCCAGCTGATAGATCTGATCACAATGAAACTGTAAGTTTACATGCTACTTGCTGTCACACACGCATGCTTTAATTGTTTTTGTTAGGGTTGTCGATTTGTATATGAAAATCCATCCGTATCCGAAAATTGAAAGAAATATTTGATATCCAAAACAAATATTGTATATGATAATAATGGTACCACATGCAAATAAAACCCATCTGTTTTTTCACCAGAACAATAATATGTGTATTTTAGTAGAATAGATGATTGAGAATTATATTGTTTCATTATGTTTTAAGTGCAAATTTGTCGTTAGACTTTACTTTTACTATCATATTAATTATTTCCTGTTTATTTTTAAAAATTGACATTGAAATGGTTAGACATTGAGTTATATTTTCCTATCATTTTTTTAATTTATCGATTGTTAGTGGATAGCTAAAATTTTGATGTCCATATTATACGTGCATACAGATATTCGGCATCCAAAATGATTTTAGGTAAGAATATGAATGTAACAATATCAATATCTAAAAGTGCCCATTGACGTGCCTAGTTTTTATTGCTTTTTCGTATGTATATGTTCATATGGTTGTGTGTGTACACACATCTATCTATTTTTATATAAACCAGTTTGTGCGCACGTATGTGTGTCAGGGATCAATTGCACTCTTTTATGTTATACCTCTAGCGATATACCTCAGATATAGTTTAGAGATAAACTATTCAAAATTGAACAAAAATTATAAATATGCTCTTAGACCAATAATTATTAAAGACCACCTTCACAAAACTTAATCATTTGGATGGCTGAAATGTTCAAAAAATAATACTTCAAATTGCTTGTTGAATTTAATGATTGATATCAACTTAACATTTCGAACATACTAAATTTTTTTGAAATGATTTCAGTTTTTTTAATCTGATCTTCGTTTGTATAATAACAAATTTACAATGTTTGGATTTCATTTCAAATTGTATGACTAAAAAATATTATAGTGTGTATACACAAAATAATGAATATGTGTTTTACACAGAGAAACAGCTGTGCACTAACACATGAAATGACAATTACATCTCTAAAGCTTTTGTTATGTCAAACCAAAACTAATGGTTATATTAGTCATCCTCATGTTATAACGTGTGTGTGGACACAAGCAGATATGTGTGTGTGGACGTGCGCGCGCACACATATATATACATAAAGAGAGATAATGATGAATGCATATTTTCTCTATTTTTGACCCCTTTGTATCCCTTAATAATGGCCATTAGATTTCAAACATTAGTGGATTTGTTTGATGATGATGATGCAAGAGAGGGAAAATGATACATTATGAAAGAGTAGTATTGAATATTCTCATTAAGCACGTCCACTAATTTATTAGATCCAATGAGTAGTAAACATTGAGGGACTTATATACATATGTATATGTATGAACAAAAAATGCTCCATATTATCGTCCCTTTTTTATGCTTTCATATATCCATATTCAATTTCCATATAGAAAATATCAAAATAGGCATATTTTTTGTAGAATATTCTTATTAAGTATATCGCACACAAAGTTTTTTGTAACATTCTGAAACTTCTACCCAAATCAAGTGCTTAAATAAATATCTTCCACCCCTCATATTTCATTTAGGATTTGGAAGGGGCTATGGATGTTCTGAAATCGTATAATTTTCTTTCGATGTTGATCTATGTTATAGGATAATTATATCTCTGTAATACATGTTAAAGAAATATTGTTATATTTTACAGGAAGTAACCAACACGGCTTCTACTTCAGCTAGACACAGAAGAGGATGCAATTGCAAGAAATCAAATTGTGGGAGCAAATACTGTGAATGCCGCGGGGTACTGCAGAAATTCTATGTTGTCTATTAAGGTCATCAAAGTATTTTTAAAACAAAAATTACACCTTGGCATCCAAAAGTACAATCATTTTTTATTTTATTGAACACTTCCGCTTTAACTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAACAAAAAGGACAACTTTGCAATAAACAAACTCATATGTCAGAAATGTAAAAACGACAGAAATTATGATAACCCAGAACTTCAGAAATTGTTTGTTTTTTCAATATTTATTAACTTTCCAATTTTTGTGTAGCCAGTTAAAGATAATAATTTTTTCTTCCATTATATTGTGAAGTTTGTTCTTTCCTTCACTTGGCCCATGCTATGGAGATATTTTAGTCTGGTTTAATATATGTGTTGTTTGATTAGTGTAATACTACATTAATTAAGACAAATGTTTCTATATAGGCCAAAGTCAGATGCTCGGAGCTTTGCCGTTGTGTGGGTTGCAAAAATGGAATTGAGAAAGAAGATGGTTAGTAATTATCATTTCTTAGATTTTTCAATCATATGAGTGTTTCTTAATGGGTGCAATTTTAGTTTGTGCATGACTTTACCTTCCACAAACCAGTATTTTGTATGTGTATAGCACATGTACAAAACAAATGAATAAAATATGAGCAACCGCTTAAAAAGGGCTTCAAGAAAACAGTCTACAAAAATGATTTTTCTTTTATATTGTGCAAAGGATAGTTGGTTTCTAGAAAGAGTTATATTACATAGCTATTTATAATATTTATGGATTTATACTAATAAAAGATATACTATGTTGCTAATAAAGGTAGAAAATACTACATACAATTGTATTTGTTAATTATTTGTTTTAATACATATATAGGGGGCGGCTATTTAGTCACAAAATTAGACACAAATTGGTGACACAAAAATTCATAGCTGTTGGATATTTTTGTCCTTATATGGAAGGTGGAAATCAGGGGGCAATCCAATATTTAATTTTAACCTTCATATTGAACTTTTTGCAAAAACGTGTAGTGCAGTGATTTTTTTCGAATAATTAATTGATATTTTCTATATAGAAAAATTAAGAAAATCAGTCCTCTCACAAAAATAAGTGTGCATAACGCATCGTATAATTCAAGTTTTGTCCATTAAGCACCTTGATGTCCAGGTACTAAACCAAGAGCTTTTGAAATACAATCTTGCGATCTTACTTCTAAGCAAGTGGTCCTTGACTTTATGATATGAAACTAGAAAGATTGAAAGTTTTCATCTCATCTTATTTTCTTAATAAACATAAAAACAACTTTGATCATTTAACTTTGAAGTTCAAATTAAACAAATTTAGTTGAAACCAAGACTTCGCTTTGAGGGTTTATTTTCTTCCGGTATTGACCGGTTTTGAACGGTTTTGTATTTCACGTGTTATCATAATCCTTGCTTTTAAGTTTTTTTTTCACACTGGTTGTTGTTGGTCATAAAACTGATGAAAACCGATGCAGTGTATTTTGATAGCAATTCTCAACCCATCAAATTGGAGTGTTTTGAGGGGTTATAACTTTTTTCCAATTATATCCCAACTAATTATCTTGTAGAATTAATTTTCACAAAACTAAAGAACATATATAAGAATATATATGTAACGTTACTTTAGTAGTAAACTCTCAAAACCAGTGTATGTTAAACTCTTAAACATGTATCGAGCGGTTATAACAACACCTTATGTAAACCAATCAAAACCGCTACGATCATTTACGGTCAAAACCGATACTCTCAAAACCTCTCATAACCGGTACTACAAAACTCCCAAACGGAGCCTAAGTGAGTACTACGAAGTCCTTATATTCTAACTCTTCATACTCCTTATCTGTGTTCAGAATCTTCAGATAGAAAGAATCACAAACTTGTATGAAAATCAGTAGATTTTTGGTGTACTATTATTCATCGATTATGAATAATGAAGGCACTTGATTTTTCCAATCTTCGTATCTTTACTTTAGTAGTTTTTACTTTATCAATTGTTGTATCATGCCATAATAATACAAACTGCAAATTTCATCATGTTAATTTTATTGTCTACTGTGTTAGAAAATGACGGTAACATCTCCTTAACAAAAAACAACTTTATATCATATCTGACTTTTTACCATTTAGCTTGGAAGTTCAATATTATACAAATTTATTTGGAAATATTGCTTAGTCCATTAACATACATAAATCACTACATGTTGGGGAATAGCAGTTTTAGAAGCTAAGCAAGTGCAATGCTAGGTGTTTGCCACAAAAGTTAATATAAATACAAAGTATAGCTCAGCCCATGGATGTTGTGGCTATTCTATAAAATGAAATACAACTAAATCTAGTCAAATTAGATTTTACATCTAGCTATTGTAACATGCTTTTATTTATGACATAAATTATACACAAATTCAACTGAAAAATACAAAACCTTCTGTGATGAAAACGTTCTAACGAACAACCAAAACTTTATATTGGATGATGGACATGTGTCATATGATTGTTTCTAAAAATTCATAGAACAATATCTACAAAACTTAAACTTCATTTCATATATATACATTAATGCAAATTAGGCTTTAACTTAATGTGCCAAGTTACTTTAGCTACGAAATCAAATTTATGAACTTTATTTGTGCTATTATGAATGCATCAGTATTACAAGGCCTTTAACATTGATAACACAACGATATTATAGCACCCATCAACACGAGAATATAAATCTAGTATTGTCGCATTTATGAATAGACAAGAACCAGCTTATGCAAATGCAAATCATAACAATCATTATACAACACTTAAAAAAAAGACATTTTTAACATATACATTAAATATGCGATAGTTTTGGGATTTGCTATCATGTATTTATGAGAATATATTCTCCTCCTTATGAGTTCTTTTACCTCACCAATAAATTTAGCTTCTCTAATGGTAACTCAATCAAAATATTTCAACTATCGAATCACAACAAGCCTTTGTCCTTATATAAAACTTTTCCCCTTGATATAACTTTTCTTTTAATCCCATACTTTGTGTGCTTAAAATTAAATAACCCTAATACAACCACGTCACAACATAAAGGGTTGAAACCGTTCATCCTTTTATTGTTTTGTTTTATAACTTCAAACATTATAAGAAAACAAATTAAATTGTGTGTGTGTGTGTGTATGGATCAGCAACTTCAATTTTAATCATTCTATTTGAACTAGCACTCAGGGCAAACAAATGTATTTCTTTATGCAGGTCAAAGATTCGAAACAACTTTAATACCAAATGGCAGAAAATTACAACATATTTTGTTAACTCAGGACAACTTTGGATCATGTCTTCTTTGATTTTCCTTAGAGGTTCAACATCAAATGAATTTTGTTGAAACCAAACAAGTATTACACAAAACCCGCTTTATATGGTCCATGTATTCCTTAATGTCTGTCTAAATGAAGAGAATGATAAGCTTACATGGAAAGTAGTGGGCTTTAGGGGTTCCATAACTCTTCCATCATGAGTTACGGAGTCTCTTGATTTTCCCAAAATTCACATTTTTGACTTTATTGCTGTATAACTTTATTAATTGTTAGACCACATCACAGTAATGCATGTTACAATTATGAGTTCTTTACATCGAATAATAAGACCGAGTACAGTACAAAAATGAAATTCTTTTGATTCTTTGGTGCTTTATTTTTAGACATGTATTGCTACTTTACCATCAATTGAAATTTCTTGTACCAGGTAATAAAATAAAACTGGAAGCGGAAACAAAAGAAGAAAATCTTCATGCACCAGATGATAAATCAAAACTGGACGTCGGAGCAACAAATGATTTGGAAAAGCAAGATGACTCCATCCCAACAAATGACGAAGAACACATGTCATCTACTACTTTATCGTATTCTAATACTTCATGGTATCTCTTTCATTATCTCTGCTATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020686454.1	3.0e-34	protein tesmin/TSO1-like CXC 3
Swissprot	F4JIF5.1	6.5e-34	Protein TSO1-like 2
trEMBL	A0A8T3B3Z5	2.2e-34	CRC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G22760.1	35.17	1e-35	147	SOL1	Tesmin/TSO1-like CXC domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g225294	AT3G22780.1	156	82	0	108	263	386	541	47.44	9e-36	147
g225294	AT3G22760.1	290	146	10	5	258	180	463	35.17	1e-35	147
g225294	AT4G14770.1	140	69	0	116	255	368	507	50.71	1e-35	146

Ortholog group

Species	Genes
Allium cepa	g225294.t1
Allium fistulosum	AfisC8G04774
Allium sativum	Asa1G01249.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03638.12	TCR	Domain	123	158	38.2	1.2e-09
PF03638.12	TCR	Domain	209	243	36.9	3e-09

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009934	P	regulation of meristem structural organization
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048444	P	floral organ morphogenesis
GO:0048509	P	regulation of meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051302	P	regulation of cell division
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21776	LIN54; protein lin-54	EC:-	Cellular senescence	ko04218

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network