result

Gene information

Detail information of g227954

Location

Gene	Chr	Start	End	Strand
g227954	Scaffold_54530:HRSCAF_437616	109422	110885	-

Sequences

CDS

Protein

Gene

>g227954.t1
ATGATGTTAGATTACGACTGGACTAATAACCCAGCAGCGGCTGCAGCGGCAATGATGCTCTTCGGAGAAGAAACAAATACTAACCATGTCGATATCCAAAATAGTCATCATCATAACAATCAGATGTTCATGAATCACTGCAATAACATGGATTATTTTCAACAAGCTCATGATCATCATCATGGTATTCCTACTACTGCCTTTTGCTCGAATGTTGAATATGTAGGGTGTCATCATCCATTAGTGCCTATAGCATCTAGGATAGGATTGGATCTTGGTATTAGGACATATTTTGCTACTGGCCCCGAAGAGACTGAGAGGGGAAGGCGGAATAGTAATATGAATATGATGATAGGAAGGAGGAGGAGGAGAAGGATAGCAAGGTGTCAAGCAGAAGGATGCGGGAAGGATCTTACACTAGCAAAGCATTATCATAGAAGGCATAAGGTGTGCGAATACCATTCTAAGGCATCGATGGTTGTCGCTGCTGGCTTGTCTCAGAGATTTTGCCAGCAATGTAGCAGGTATTATTTATGCTATATTCAGATATTGTACACTTTTTTACTAGTTACAAGCAAGTTTAGTACAATACCTTATTAACAATTAATGAATAATCGTTCCATGTAGGAAATATATTCATAATGCGAATTGTAAGAAAGTTAACAAGTTGCTAAAATAAACGGCCTCTAGCCTCTAGTTTGTTAAAACCCTAGCTTTGGATAAGTAGTCTGCAGTTTAATATTCTTAATTAACTTCAATTATATATTTGATTAATTTGGTTAGCACTGAGTAGAGAACAGATCACACATAAAATAATAAGCAACGGTCTTAGTTTTGTAAATTTTTCCTAGCATTCTTTCTCAGTTAATTAAGAGATTCATTAACATTTATTAATAAACGTAAATCATGCGTATAAGTAGCTATAGTTAGCTTATTTCTTGGCATGAATACTGTGTCTTAAAATTCCACACTGGTAGGTTTCATATACTATCAGAATTCGATCAAGGCAAACGAAGCTGTAGAAAACGGTTGGCTGATCACAACCGACGCAGAAGGAAATCTCAAGACCTAACGACAACATCCACGTCAATGTCCATCAATACAAATCCAATCAACAACAACAACAATAACGACACCACATCATCAACAACAACAATATTGATAGGCAACAAATCACAATTCAGCTCAGAAAATTTGCAAATTGAAATAGGAACAAAATTAACAGAAGCATGTTCTTCAGTTACAACTCATCATGATCCACAGGTGCATTTGGATATATTTCCAGCACCCCAAATGGAATTAGGGCTAACTGCATCATCATCTGCAGTCAGTACTACCGGTACTATAATGCAACAAAACAAATCTTTTAATTTGTCTAAACTCGGAGAATACCGTGAGCTGAGAAATCGATTTCCTGCTAGCTGGGTTGATGACGAAGCAGAAGAAATGTATCACAACAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020589290.1	7.6e-36	squamosa promoter-binding-like protein 13
Swissprot	Q8GXL3.2	4.0e-34	Squamosa promoter-binding-like protein 8
trEMBL	A0A835PRT3	1.9e-36	SBP-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02065.1	60.14	2e-40	162	SPL8	squamosa promoter binding protein-like 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g227954	AT1G02065.1	143	54	3	85	225	144	285	60.14	2e-40	162
g227954	AT1G76580.1	110	49	1	128	236	81	190	54.55	1e-30	130
g227954	AT1G27370.4	143	51	5	82	206	116	253	48.25	9e-30	127

Ortholog group

Species	Genes
Allium cepa	g227954.t1
Allium fistulosum	AfisC1G02193
Allium sativum	Asa7G02189.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	129	202	103.9	3.5e-30

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007049	P	cell cycle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009553	P	embryo sac development
GO:0009554	P	megasporogenesis
GO:0009555	P	pollen development
GO:0009556	P	microsporogenesis
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0019953	P	sexual reproduction
GO:0022402	P	cell cycle process
GO:0022414	P	reproductive process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034293	P	sexual sporulation
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043934	P	sporulation
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044703	P	multi-organism reproductive process
GO:0048229	P	gametophyte development
GO:0048236	P	plant-type spore development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0051321	P	meiotic cell cycle
GO:0051704	P	multi-organism process
GO:0061458	P	reproductive system development
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903046	P	meiotic cell cycle process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network