result

Gene information

Detail information of g228106

Location

Gene	Chr	Start	End	Strand
g228106	Scaffold_54546:HRSCAF_437632	110789	111664	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK75185.1	6.4e-23	uncharacterized protein A4U43_C03F14250
Swissprot	A0AQW4.1	3.3e-16	Protein BRANCHED 2
trEMBL	A0A5P1F9Z5	4.6e-23	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G18550.1	37.06	2e-22	103	AtBRC1;ATTCP18;BRC1;TCP18	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g228106	AT3G18550.2	191	102	6	56	232	142	329	37.70	1e-22	103
g228106	AT3G18550.1	197	99	6	56	232	142	333	37.06	2e-22	103
g228106	AT1G67260.2	211	108	5	20	203	29	232	32.70	4e-21	98.6

Ortholog group

Species	Genes
Allium cepa	g228106.t1
Allium fistulosum	AfisC3G00509
Allium sativum	Asa2G00245.1
Arabidopsis thaliana	AT1G68800.1
Oryza sativa	LOC_Os03g49880.1; LOC_Os08g33530.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	61	205	130.4	7.7e-38

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060688	P	regulation of morphogenesis of a branching structure
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1900618	P	regulation of shoot system morphogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000032	P	regulation of secondary shoot formation
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905428

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network