result

Gene information

Detail information of g228875

Location

Gene	Chr	Start	End	Strand
g228875	Scaffold_54659:HRSCAF_437745	565261	566808	+

Sequences

CDS

>g228875.t1
ATGCGTAGATTTGTGTGCACTAAAGAAGGCTTTACTCCTTTCGAAGAAAATGGTGATGAGAGTAAGAGAAAGAGGGCAAGAGCTCCGGTAAGAGAAGGATGTAAAGCGATGTTTGAGGTTATTAAGAAAGAATGTGATAGATGGGTTGTTTCTAAGCTTGTATTGGAGCATTCTCATGAACTTGTTGTTGAACCAAGTAAGGTGCACTACATACAATCACAAAGTGAGGTTGTTGTTCTTGGAAATAGCACAAATAATTGTGAGAAAACGACCCCTATTGCCAATTCAACTATAGATACTAATTCCTTTATTGAGCAAGACTTGATAAGTGATAGCAAAGACCGTAGACAAATTGTCTATGGTTTTGAAGACACTCAAAGCTTTTTGGAAAACTTCAAAAGAAAGCAAGCAGAAAATCCAGCATTTTTTTATGCATATCAAGTTGATACGGATAATTGTTTAACTCATGCCTTTTGGGCAGATGGGAAAGCTAAAATGTCATATTTTTGTTTCGGCGATGCGGTAAAATTTGACATTTCTTACATGGATGATAAAAACATGATACCTTTCTTTCTGTTTAGTGGTGTTAACAATCACTTGCAATTGGTCATATTTGGATGTGGATTGCTTACCGATTTCTCAGAGCTATCATTTGTGTGGCTTCTTGAAAATTGGCTTATTGCCATGTGTGGTCGGCCTCCTGTTTCTATAGTTTCAGATTATGATGATTCTGTGATGCAAGCAATTTCCAAAGTATTTCCTCATACTCCTCACCGTCTGGACAAGTGGCATATTCTAAACAAAGTAAAGGAAAAATTGTCAAATGTATATTTCACTCGACCTACTTTTGAAAGAGATCTGATGAGATGTATTGATGACTCTCAAATGGTAGATATATTTGAAATACGTTGGAAGGCACTACTCAATAAATATAACTTAAGCGAGTGCTCATGGCTCGAATTTCTATACAATATTCGTGAAAAATGGGTACCAGCTTACAATAAGCATATTTTTACTGCAGAAATTTCTAATAACCATAGACCAGAGTGTTTGAATAAGTTCTTCGAGAAGTATTTCAATATGAAGACAACTCTTCCTGTATTTGCTTATTTATTGGAACATGCTCTAATTGGCTGGCATGATAAAGAAAACTTGGAGGATTTTGCAACTTCATTTACAAGACCAGTATTACACACTCCATCCAATATGTTAAAACAACTTTCAGAAATCTACACAAGAACAGTTTTTGATATATTTCAAGAGGAATTTATTGAATCTTTGGCTTATTATGCTGATAAAGTTGAGGATGGGTTGGTTTGCAAATATAATGTTGCCAAAGATGAGGACCTTGAAAGCATGAGCACTGTGATGTATAATCCATCAGAAAGAAGAACAAGTTGTAGCTGCTGCAAATTTGAAACTTCAGGTTTATTGTGTAGGCATATATTGAGGGTGTTTTTAACAGTTGATGTGCGTGCAATTCCTGATTTTTATATATTGAAACGGTGGACAAAGGATGCCAAAACTGCTTTTGGAGACATCACTTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242495.1	5.7e-216	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	1.3e-103	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8B8J882	1.6e-199	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	39.46	4e-106	382	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g228875	AT4G38180.1	522	301	5	2	510	117	636	39.46	4e-106	382
g228875	AT2G27110.2	481	291	5	32	509	106	580	37.63	7e-96	348
g228875	AT2G27110.1	481	291	5	32	509	106	580	37.63	7e-96	348

Ortholog group

Species	Genes
Allium cepa	g228875.t1; g415141.t1; g457546.t1; g481319.t1; g481320.t1; g505241.t1; g519661.t1
Allium fistulosum	AfisC1G02521; AfisC1G05889; AfisC1G05909; AfisC1G06551; AfisC2G06359; AfisC3G06359; AfisC4G01117
Allium sativum	Asa2G05399.1; Asa7G02936.1
Arabidopsis thaliana	AT4G38180.1
Oryza sativa	LOC_Os03g45300.1; LOC_Os03g50900.1; LOC_Os06g39680.1; LOC_Os06g49550.1; LOC_Os08g06930.1; LOC_Os08g06930.2; LOC_Os11g14020.1; LOC_Os12g12380.1; LOC_Os12g12380.2; LOC_Os12g12380.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	2	62	47.5	2e-12
PF10551.6	MULE	Domain	176	267	68.6	4.6e-19
PF04434.14	SWIM	Domain	460	488	31.0	1.3e-07

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network