result

Gene information

Detail information of g231349

Location

Gene	Chr	Start	End	Strand
g231349	Scaffold_54998:HRSCAF_438084	17819	23154	+

Sequences

CDS

Protein

Gene

>g231349.t1
ATGTATTCATTCCCAACTTTCTCCATTTCTGAGCATCAGCACAATTTTCTCACAATAAATTGGAACAAATCCATCCCAAAAAACCCAAAATCGAAACTCAATTTATTAGCAGAAACCCACAATAGAAGCAAACCAAATCATTGCACCTTTCATTTCAGTAAATTATAATGGAGAAATACGAGCTAGTAAGAGATATTGGATCGGGTAACTTTGGCGTTGCAAGGTTGATGCGAAATAAAGAAACCAAAGAGCTAGTCGCCATGAAATACATCGAGCGAGGCCAAAAGGTTAGATCTAGTTATCATTTTTATTTCGTTAAGCAAACTTATTCAGTGATTTTGAATTTCAGATCGATGAGAATGTGGCGAGGGAGATTATCAATCATAGGTCGCTTCGTCATCCGAATATAATTCGATTCAAGGAGGTAAACAACCAAGAGTTACCGGAAAAAAAGTTACAGAGGGGATTCTATATGTTTGAAAATTTAATATAGTTTGTGGTCTTTTTGTGTTACAAAGGTTGTATTGACGCCTACGCATCTGGCCATAGTGATGGAGTATGCTGCTGGTGGAGAATTATTTGAGAGGATTTGCAACGCCGGGAGATTTAGCGAAGACGAGGTGTTTCCTTTGTTTAATTATTATGTCGCCTTTAAAAAAAAAATAATCAAATTCGTTTGAATTAAATGACTCTTGTGTCGTCTTAGGCAAGATATTTCTTCCAGCAGCTCATTTCTGGCGTCAGCTATTGCCATTTCATGGTAATACATACAGTAGTAAAAAATAATAACACAAATTTTTATAAACTGATACAAAATCGTGAGTATTCTTTATTGTGGTATTTAGCAAATTTGCCATAGAGATTTGAAGCTGGAGAACACTTTGCTGGATGGAAGCCCAGCTCCTAGACTCAAAATTTGCGATTTTGGATATTCTAAGGTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTCGTCAACTAATTTGCTTTGGAGGCTTGAGCCTACAATGTTATTAGCAAATTTTTAATTGTAGTTCTTCATTTTATTTTGCAAAATAGTCATCTTTGCTTCACTCAAGACCAAAATCAACAGTTGGAACACCGGCTTACATTGCTCCTGAAGTTCTGTCCAGAAGGGAATATGATGGCAAGGTACATGCTTAATTTTCACACTTACCCCCAACAAATTTCAATTGCAGTATTAGGCCTATTATTATGACTTAAGTTAGGGTTGGATGTGACTCGGGTGGGAAGTAGGAATAATTTTGTTTGTATTGTATCGTTTGGTAAAAATTTGTTAGCAATAAGACAAAAGTGTATTTGTTAACGAGGGCCTTAGCACCACACTATTGTAGGGCCGATGATGTAAACATCACGAGTAGTAGTGCGGTTTTACACGTTGGCTGAAGCTTTTGACACGTGCTATGTTTGCCAAGAAATGCTGTAAAGTTTGAAATATTTTTTGGAGGCTGTGAATATGTATCTTTGAACAGTGAGATTGTCAAATTTAAATGCAAAAGCTATATATCTGTGCATATCTTTCTAGGAATGCTTTTTAGTCATTGTGTTTTTCTTCTTTAGATTGGAACAATAGCAAGTGGTGGAATAGTTAAGCAGTACCGTGGAATAGAAATGAGTACAGTGTATAATTTATTTGAGTCAATATAAAGACTTAAACTAACCTTCATTAATTTAAAAGCTAAACTTATTGGGAGAGAATTCTCGTTCTCCTTTTGCTAGTCAAACAGAAGGTTATTAGATTATGCTTACGAAGCTATGCATTTTGTTAGTGGCGTATGCTACCCATCTCTCTTTAAGGTTGTACCTGAAGTTAAATTAGTTGGATCATTCATAGTTTTATCATCTTAAGATTAACTAAAGGTTGGATGTTACGCTTGGGTTATTAGTAGTCCGATCTCTCAATAAGCCTACAAACCTTACAATGCTCCTCCCATTTACTTGTTCCCGTTTCAAAATTAAGTTGTTAAGTAAGACCGTGTTCAAACTACCGCTTTAGGCAAAAATTACCCTCTCTCCTGGGGCGGCCCGGTCATTGGCATCTTTGGACAACTATTTTTGGCCTGCTTTTTGGTAGATCCAATTTGTCTGGATTGTATGTAGTAGAATCATTAAAGTTAACGTACAATAAATCTTTACAATTGTATTATCCATTAATTAAATTTTAAAAAATTGAAGCACCACCTCACAATGTATGTTGTTTGCGAGTAAGCTGCACTCAATGACATCTATTCGTAAATCACAATTATTGAACCAAAGCTTATTTGCAATATTTTTTCCCGTGGATTGGTATACTGTTGACCAGAATATTTGTGAAAGTTTGTTGTAGTGGAGGAGGAAATGTTTTTTTTTTCTTAATTAAAAAATGGTCTGGTTATCCAAAGAAGACTAATGTGTAACCCCGTCCATATTATATGATAATATTTCAGAAAATGTTAAAAATCTAATTTGTTTTTTTAATAGAAGTTGTAAAATTTATGCGGTTTTGCATGTGAAAATAATTATATTTGTTAGGATAAATGTGGTATGGATTAGATTGATTATTTTACTAAATTTAATATTTGTTTGTTACGTGAATGAATGCTACCTAATTATGTTTATTCAATTTTAGTCAGATTTATTTAGTCAGAGTTCAAAATTCGTAAAAGACATTGTCTATATAAATTTCAAGTTTGCCACCAGATTTGTAATAAATTTTTGAGATAAATGATGCGTAAATTTGGAACTGAAAAGTTTGTATTAACAAGATAATTTTAAAGTCGTGAAGGGTGAAAGTGAAAATATAACTTATGTTATCGAAGGAAGTGTAAGAATTTGGGAATGTGGAGAACTTAAATGAAATTAATGATTTAGGTATTTACGAGAATTAGATCTGAATTTTAAAATGTGAATAATGATTTAGGTATCTACTACATAATTTTGTATTCTAATTGAATTCCATTACTCTCTAGTTGAAGTTTGTGAATGATGCATATATCGATGTTGATAATCTAATTCAAATATATAGTTTTATAAATATATTTCCTTACTTTTGGTTTTTTTTCCCCTTTTGTACTCGAATTTACAGGTTTATTGCATATAATTTAATAAGTAAACAAAGTTATTTAAGAAAATGCCTGTACAAAATTGAGGAAGAAAAAGAGGAAAGAAAGAACATGAACATACAAGGACAAGGATAAAAATATACCATGAGAAAAATAAGCAAAGAAAGCATGAAAAACCAAGCAAAGAGAAGACATGAAAAACCAAGCGAAGAGAAGACACATAAAACCTTGACAAATATTTAATTTACATCATTGGTCCAAATACTCGAGTTCCCAATTTTAGAAATGACATGCAAGCAGCTGGTCTCATTGCTTTGTTAACATACAGTGCTTAATTTTTATTTAATTTACGATGGTTTTTATTCTTTCTTTCCTTTTCTTCTTCTTATTCTTTTTTTTAATAATTTATTTGGAGTCTTTTGAGCACAATGGCCAACTAACACAGGTCTCTTTCTCGACCTATCTAATTGGGCCATCAGTGGTACTAAGGTTTTTACAAAACAGTCAATTTTTGTCCACTTCTAACAAACATTTACTTTTTTTTTACTTAATATTTAAGCAATTTCCACCCTTGAAAGGTAAGTAACCATCCTTGAAAGCCAAGTAACACGCCGTGAAAGCCAAACAGACATCCTCGATACCCAAGTAACACCTTGCTGAAGCCAAGGCACACTATGAAAGCCAAGTAACCTTGTCAACTAGCTACAAATAATCCTAGTTAACTCTTAGCTCATTTTCTGTAGGGTTATGATGACAAACCTATCGCTATTTTTTTGATATATTTTCTTCGGTATTTTTTGATGTATTGCATAGTGGTTCTCCATCGATGTTTCATTGTTATTGACTACCTAGCTTTGATAGTAAAAACCTTTTTTTTTCTTTTTTTTTAATGTTAAATTTGGGCAAGGGCAAGGGCTGCTGGATCCATCTTGTTGAAAAGTTCAGTATAACACTAAAATTTTATGGCAATATTTTACGTTTGTGCAAGCATGAAAGCCACTATCATAAATAATATTTTTGTTATTATTTTCTATTTCTCGTACATTTAAGGATAAAATATATGCAAAAATCATATATATATCGTGGCTTCCTATCGACACTACATTTTACATTGTTTATTACTTTTGTTTTTTTTTCCTTATCCTCTTTCTATTCAGCAATTCATTTTCAATGTTAATTGGTATATTATCAACACATTCTGATTGGCAAAGAAAAAGCAAACATTATTGGGAGTGAAAAACGTTTGGTCGTAGAATAAAATGAGTAATAGAACTGAATAGGTAAAAATCAAGTGTATACCATGGTGCAAACAATAGATCTCTACGTAGCTGTGCAGGTGGGAAATCATTGTTATCCTTGTTCTTATGTTGATGAAGAAATCAGTTCAGACCTTTGAGAATGTTAGATCTGTTATCATTTAATTTTTGTTCAACAAATTAAGTACAATATAATTTTGCAACTTTTGTTTTTCATGGCGAATTTGAATATTCATTGTGTGCGCACGCGCTTGTGTATTAGTAAGCATAAATAGCTGTGGTTAATTTAGATGGCAGATGTATGGTCTTGTGGAGTTACACTGTATGTGATGCTGGTTGGAGCTTATCCATTTGAAGACCAGGACGACCCAAAGAATTTCCGTAAAACAATCGGAGTAAGATAATCTTCGATTTGTCCCGAATCCAATCATCTAAAATGGATGATCAATTGTACTAAGCCTTGATCTGATATATATACAGAGAATAATGCAAGTTCAATACAAAATCCCCGACTATGTTCATGTATCTCAGGACTGCAGGCAACTCCTTGCCCGCATCTTTGTTGCTAATCCTGCACGGGTAAATAACCCATATTCCTGATTCACTCGACTCTCTTTACATAGTAATCAACATATCTGTTTCTTTTTATGATAGAGAATTTCTATCAAAGACATAAAGAGCCATCCATGGTTTCTAAAGAACTTGCCAAGAGAATTAACAGAAGCCGCTCAAGCCGTATATTTTAAGAGGGACTACAATGCCCCAACATTTTCTATGCAAACCATTGAGGACATTATGAAGATTGTAGGGGAAGCTAGGACCAAGCTTGAACCTTCAAAGTCGATATCCAAGTATGGATGGGTCGAAGAAGATGAAGACGATGAAGATGTACCCGAAGAGGAGGAGGAGGAAGATGAAGACGAGTATGATAAACAGGTCAAACAAGTTCATGAAAGCGGCGAATTCAACAACCATATAATTGATCATATTCGTGAGAAAACCGAGAAGTTAAATTTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	AIZ68211.1	1.3e-165	serine/threonine-protein kinase SAPK7
Swissprot	Q7XQP4.2	3.4e-160	stress-activated protein kinase 7
trEMBL	A0A0A7LUE3	9.0e-166	Serine/threonine-protein kinase SAPK7

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10940.1	79.60	4e-158	554	ASK1;SNRK2-4;SNRK2.4;SRK2A	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g231349	AT1G10940.1	353	59	2	53	394	9	359	79.60	4e-158	554
g231349	AT1G60940.2	348	63	2	53	392	9	354	79.02	2e-157	552
g231349	AT1G60940.1	348	63	2	53	392	9	354	79.02	2e-157	552

Ortholog group

Species	Genes
Allium cepa	g231349.t1; g242237.t1; g298360.t1; g334533.t1
Allium fistulosum	AfisC1G00246; AfisC1G03480; AfisC1G06772; AfisC3G02803; AfisC3G03265; AfisC4G00635; AfisC5G06668; AfisC6G00852
Allium sativum	Asa2G02236.1; Asa2G02621.1; Asa2G02622.1; Asa4G00632.1; Asa4G04856.1; Asa7G00630.1; Asa7G00633.1; Asa7G02790.1; Asa7G05049.1
Arabidopsis thaliana	AT1G10940.1; AT1G10940.2; AT1G60940.1; AT1G60940.2; AT1G78290.2; AT1G78290.3; AT2G23030.1; AT3G50500.1; AT3G50500.2; AT4G33950.1; AT4G33950.2; AT5G08590.1; AT5G63650.1; AT5G66880.1
Oryza sativa	LOC_Os01g64970.1; LOC_Os02g34600.1; LOC_Os02g34600.2; LOC_Os03g27280.1; LOC_Os03g41460.1; LOC_Os03g55600.1; LOC_Os04g35240.1; LOC_Os04g59450.1; LOC_Os04g59450.2; LOC_Os07g42940.1; LOC_Os07g42940.2; LOC_Os07g42940.3; LOC_Os07g42940.4; LOC_Os07g42940.5; LOC_Os07g42940.6; LOC_Os10g41490.1; LOC_Os10g41490.2; LOC_Os10g41490.3; LOC_Os12g39630.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	53	304	235.3	6.8e-70

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005488	F	binding
GO:0005543	F	phospholipid binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0008289	F	lipid binding
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009791	P	post-embryonic development
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0022622	P	root system development
GO:0023052	P	signaling
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0036211	P	protein modification process
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048527	P	lateral root development
GO:0048528	P	post-embryonic root development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0070300	F	phosphatidic acid binding
GO:0071704	P	organic substance metabolic process
GO:0098542	P	defense response to other organism
GO:0099402	P	plant organ development
GO:1901564	P	organonitrogen compound metabolic process
GO:0090696
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14498	SNRK2; serine/threonine-protein kinase SRK2	EC:2.7.11.1	MAPK signaling pathway - plant	ko04016
K14498	SNRK2; serine/threonine-protein kinase SRK2	EC:2.7.11.1	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network