result

Gene information

Detail information of g231499


Location
GeneChrStartEndStrand
g231499Scaffold_55020:HRSCAF_4381068060597555+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020250606.11.6e-97single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2
SwissprotQ66GR6.18.2e-83Protein WHIRLY 3
trEMBLA0A6I9QVT68.7e-90single-stranded DNA-binding protein WHY1, chloroplastic isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G02740.268.332e-87 318ATWHY3;PTAC11;WHY3ssDNA-binding transcriptional regulator

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag231499.t1
Allium fistulosumAfisC1G01486
Allium sativumAsa7G01402.1
Arabidopsis thalianaAT1G14410.1; AT2G02740.1; AT2G02740.2
Oryza sativaLOC_Os06g05350.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08536.8WhirlyDomain86220197.18.6e-59

Gene Ontology
AccessionOntologyName
GO:0000018Pregulation of DNA recombination
GO:0000229Ccytoplasmic chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003697Fsingle-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0006952Pdefense response
GO:0050832Pdefense response to fungus
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006281PDNA repair
GO:0006355Pregulation of transcription, DNA-templated
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0042162Ftelomeric DNA binding
GO:0008150Pbiological_process
GO:0009295Cnucleoid
GO:0009507Cchloroplast
GO:0009508Cplastid chromosome
GO:0009532Cplastid stroma
GO:0009536Cplastid
GO:0009570Cchloroplast stroma
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009620Presponse to fungus
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010639Pnegative regulation of organelle organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0033554Pcellular response to stress
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032204Pregulation of telomere maintenance
GO:0032205Pnegative regulation of telomere maintenance
GO:0032210Pregulation of telomere maintenance via telomerase
GO:0032211Pnegative regulation of telomere maintenance via telomerase
GO:0033043Pregulation of organelle organization
GO:0033044Pregulation of chromosome organization
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042646Cplastid nucleoid
GO:0043170Pmacromolecule metabolic process
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044434Cchloroplast part
GO:0044435Cplastid part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0045910Pnegative regulation of DNA recombination
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051053Pnegative regulation of DNA metabolic process
GO:0051128Pregulation of cellular component organization
GO:0051129Pnegative regulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0098542Pdefense response to other organism
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1904356Pregulation of telomere maintenance via telomere lengthening
GO:1904357Pnegative regulation of telomere maintenance via telomere lengthening
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000278Pregulation of DNA biosynthetic process
GO:2000279Pnegative regulation of DNA biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:2001251Pnegative regulation of chromosome organization
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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