result

Gene information

Detail information of g23216

Location

Gene	Chr	Start	End	Strand
g23216	Scaffold_14536:HRSCAF_156228	3604	5817	+

Sequences

CDS

Protein

Gene

>g23216.t1
ATGGTAACTGCTATTGATTCTCATTGCAATGATATGATTGGGCTGGCCCAGGTGCAGTCTACTCTCATGGAACAACAAAAATAGATAAATCTTATGGGTGTTTTCTACACCATACCAAATTGTATGTTGATTAAATAACGGAGATTGGTCCTGTGCTATTGAATTATACATCAAGTATAAAGAGGTCAATCACAATAGCATTACTAAAGTGCAAATATAGATGATCGATGCTTCATATACAACGAATCAATCAGAACTCTCTGAAATACAATAAATTTTATTTACCAACAGATAGATGACTGATAATAAATTTGGACCATTTCCCAAAGTTTGATGGTCTTTGTGGCCTCCATTATACGTTACAAAAATCTTCGCTGATCAACTTTAGGTGGGTAGTTTTGGTTTTGCTTAATAAAAAGAAAGAAAAATGGTCAAGAAATAAATCATTAGGGTTCAAAGTGATTCAACTTTTTTACTTTCAGTTTGGAACAGTTTTTCAAGGCTTATATATATAACTAGGGAAATTTTATCCATCTTTGCGGCATATTTGTACTATTTATTTGAACATTGTTCCAAGACCTTCTACGCCGACCCATTTCTTCATGCATTTGATTGGTAGCAGTAGATGCATATTATTTATTTGTGAGATTACATGCCTTGATCTTTTTGTATTTGTCATTTCCTTCATGGGATATTAATCTTTCAAGCATTAATGCTAACTTAATCTCCATCAAATTTCAGCCTCTGGTGTCACCTTTTGCATCTCCATTTTCACTTTATCCATATGGAATTCCCCTAATCCTTCAGTGAGCACTTGAACTCGTCTTTTCTCTCATTCTAAAGGCTAGTTGGGGTTCATTCTGCAATCTCCAGTATTTATTTGATGTTATGTTGTAGCATCAAGTCCTGTCGTAGATGTGCCCACCAAGTCACCAGATAGTAAAGATAAGGGATTAATGAAAAGCTTAAAGGGTTCAATGGTCTTGCTGTGTCAACTGGTACCATCAATGGCGAAATTAAAGTTGGCGATGAGAGTGTGCACTCGCGAAGGTTTCTTCCCTAGAATCTATCTTTTTTCCCTTGATGTATTCAAAATTGTGATAGCTTGAATTAATTATGGTTTCTTACTTGATGTATTACTACAGCGAGGAAAATGGAGTTGAGGGTTCGAGTGCTGCTAGTGATGAGAACAATGAATCAAGAGTATGCCCAATTGTATCTAGTTTTTCCCGTACATTGGTTAAAATAATCATGCTAAAGTTCATCCCTTCTACAGGGGAAGGAGAATCAGAGGAAGCGGAGCTCCGAAGATTCTCTGACTTCAGGTATTACTAATTCTCTGCTGTCATATACTAGCAATTTAGATAACCAACCTATGGTATTGCTACTCATCTGCCGTCATATACTCTTATTTAGTACCTTCTATTGTCTATATGTATGCTATGCCATGAATACCAAGATATTGTTAACAAAATCATTTGACCAGGGGACTTAATTTTTTATGTTTAATACGAGTTTGCAATATGTAGGTGATAAAACTAGTGTAGCTCCAATAATCCCCAAAGTAGTTCCAATGTACACTCTTCCTACTCCAAATCAAATGAAAGTTGAAGTGCACCCTGAAGCTTGGACCCAGGTATGTATGTTGCTGCACGTGTTTGAAGTCTGTTTCTACTTATTATTTGTATAGCATTGATATTTCTGACGATTTATTAATTGTCATGTAACTGATGTACAGGATGAGAGGGAACTGAAGAGGGAGAGGAGGAAACAGTCTAATAGAGAATCAGCAAGAAGATCCAGATTAAGGAAACAGGTAAGTTTAGGGAAAAATTATTGATGCATTACCATACATAATATTTTATTTCTATTTTGTTCTGTTTTTTAGTGTCTAATTCCTGTATCCAGGCTGAAACTGAAGAGCTGGCAATTAAAGTTGAAACCATTGGTTCCGAAAATACAACTTTGAGAAATGAACTTAACCAGCTTAAACAGAGTTTGGAGTGCCTGAAAGCAGAGAACTCCTTATTGCTGGTATTCCATTCTTTCTCAACCTGCATTTTCTGAATTGCGTCTTTGCTATGGGCTCCCACTTGTGCTTTTAGTATTATGTAGGGGTTTTCGAAAACTAGAAAACAGGTGGGGAAATTGTTAAATTGTCAGGAGGGAAAAAACACAGCTCAACGAAATATGCAAAATGCAATGACCAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_006345571.1	2.2e-06	PREDICTED: transcriptional activator TAF-1-like
trEMBL	A0A834YI26	1.7e-08	BZIP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46270.1	43.08	1e-25	112	GBF3	G-box binding factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g23216	AT2G46270.1	195	85	4	15	186	133	324	43.08	1e-25	112
g23216	AT2G46270.2	172	92	3	15	186	133	301	44.77	1e-20	96.7
g23216	AT2G35530.1	74	27	0	111	184	295	368	63.51	1e-20	96.3

Ortholog group

Species	Genes
Allium cepa	g23216.t1; g363021.t1
Allium fistulosum	AfisC6G00068; AfisC7G01675
Allium sativum
Arabidopsis thaliana	AT2G46270.1; AT2G46270.2; AT4G01120.1
Oryza sativa	LOC_Os01g46970.1; LOC_Os01g46970.2; LOC_Os05g49420.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF16596.2	MFMR_assoc	Disordered	16	89	33.9	3.4e-08
PF00170.18	bZIP_1	Family	119	181	69.4	1.9e-19

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0001101	P	response to acid chemical
GO:0006790	P	sulfur compound metabolic process
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009637	P	response to blue light
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0016143	P	S-glycoside metabolic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019748	P	secondary metabolic process
GO:0019757	P	glycosinolate metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043436	P	oxoacid metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:1901135	P	carbohydrate derivative metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901657	P	glycosyl compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09060	GBF; plant G-box-binding factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network