result

Gene information

Detail information of g233782

Location

Gene	Chr	Start	End	Strand
g233782	CHR3	120366043	120367755	-

Sequences

CDS

>g233782.t1
ATGGACTCACTCCTAGAAATCGCTGCCGAAGACGATGTCCAAAGATTCAAAACCTTAGTATATCAGGATCCATCGTCGGTTGACGAGATCGGTTTCTGGTATGTGCGGAAGAAGAAGTCGAGTCAGATGATCTACGAGCAGAGGACGCCGTTAATGGTGGCTGCAACCTACGGCAGCGTCGAAATAGTAAGTTTCATCTTATCCTTTCCCAACGTCGATGTCAACAGACGCGTTGGCCATGACTTGACCACCGCGTTGCACTGTGCTGCGTCCAGCGGATCGGCTAACGTCGTCCAAGTTATAACCTGTTTGATTGAAGCCGGCGCGGATCTAAATTTGGCTGATGCTAATGGATTGAAAGCAGTTGATGTAATCTTTGTTTCCCCTAAAATGACGGTTAGTGAAAAAACCGCTTTAGAAAATTTACTAGGAAACAGTTCAACTGAAAAGAATGGAAACTTACGGGTAGTGACTTCTATTAATGACAGTGTGGAGTGTGACGAGGAAGATCTAGATTTATTGTCTTCCATAACTGGCGAGAGAAAAGAGTATCCAATAGATCCAACAATACCCGATATAAAGAATAGCATTTACGCCTCAGATGAATTCAGAATGTTTTCGTTCAAAGTGAGGCCATGTTCTAGGGCTTACTCTCATGACTGGACAGAGTGCCCATTCGTTCATCCAGGTGAAAATGCACGGAGAAGAGATCCTAGAAAATTTCATTACAGCTGCGTCCCATGTCCAGATTTCAGGAAAGGTGCTTGTCGCAGGGGCGATTTGTGCGAATACGCTCATGGTGTGTTCGAGTGTTGGTTGCATCCAGCACAGTATAGGACTAGGCTGTGCAAAGATGGAGTTAGTTGTTCTAGAAGAATCTGTTTCTTTGCTCATACCAATGATGAGTTGAGGCCTCTTTTTGTCAGTACAGGATCTGCTATTCCATCTCCTAGATCCATGGACATGTTTCGGAATCCATTTGCTTCTCCTTCTGGATTGAGTTCTAGTAACCCATGGCCTCCGCAAAACGTGCCTACTTTGCACTTGCCTAGCAATGGTAGTAGCAATGCATTGCAATCCAGTAGGCTTAGGGCTTCTATGTTGAATGACATGTGTTTCTCTCCTAGTCGTGGGAGTAGATTGAGCTCGATCGTAGGAGGAAGGTCATTTAATCCTTCAAATCTCGATGACGTGTTCAGTGCAGAGAACCTGAACTTGTCTTCTCCGAGGTATGGGTTAGATCAAGGAAGTGTGTTTTCACCATCGCATTACAAATCAAATATGAATGTTGATACAAATCAACTGTTGCATGCATCACTTGGGATTTCATCTCCTAGTCGAATGTCCCCAAGAAGTTTCGAACAGCAATCTCCTTTGAGCGCACGGCTCAATTCTTTAGCCCAACAAGAGAAGCTTCAACAGTTGAGAAACCTTAGTTCGCCCTTGAGTTCTTCATGGTCTAATTGGGGCTCGCCTAGTGGGAAACTAGATTGGGGAGTTAATGGAGAAGAGCTCGATATGATCAATCGATCCAAGGCTAGAAATGACGAGTCCGATGTTGCTTGGATGGTCAATCCGGTTGATTCGAAAGAGGACATTGCAGTTAATGGGGTTTATGAGGACAACAATGAGGCAAATGTTCAGATTGAGGATCATGCAGTTCTTGGAGATTGGCTTGAAAATATGCAACTAGGTCCGTTTGTTGCTTCCTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008778227.1	1.8e-167	zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	1.0e-154	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A6I9S4P8	1.9e-166	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	46.52	1e-150	530	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g233782	AT2G41900.1	690	223	22	3	569	47	713	46.52	1e-150	530
g233782	AT5G12850.1	676	274	22	3	564	41	704	40.83	6e-126	448
g233782	AT5G58620.1	555	252	13	4	513	14	551	43.42	7e-113	404

Ortholog group

Species	Genes
Allium cepa	g233782.t1
Allium fistulosum	AfisC3G04702; AfisC3G04705
Allium sativum	Asa2G03898.1; Asa4G01143.1; Asa4G01144.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	42	115	40.5	2.8e-10
PF00642.21	zf-CCCH	Family	247	267	25.3	9.4e-06

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network