result

Gene information

Detail information of g235978


Location
GeneChrStartEndStrand
g235978Scaffold_55627:HRSCAF_438713172137215804-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010921169.10.0e+00E3 ubiquitin-protein ligase SHPRH isoform X1
SwissprotQ7TPQ3.18.9e-144SNF2, histone-linker, PHD and RING finger domain-containing helicase
trEMBLA0A6I9R7U40.0e+00E3 ubiquitin-protein ligase SHPRH isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G40770.146.590.01403zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag235978.t1
Allium fistulosumAfisC2G02566
Allium sativumAsa1G02384.1; Asa5G02475.1; Asa5G02476.1; Asa5G02477.1
Arabidopsis thalianaAT2G40770.1
Oryza sativaLOC_Os07g48270.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily489964293.31.7e-87
PF00271.28Helicase_CFamily1598172328.11.8e-06

Gene Ontology
AccessionOntologyName
GO:0000209Pprotein polyubiquitination
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0004842Fubiquitin-protein transferase activity
GO:0005488Fbinding
GO:0016567Pprotein ubiquitination
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0016740Ftransferase activity
GO:0019899Fenzyme binding
GO:0019538Pprotein metabolic process
GO:0019787Fubiquitin-like protein transferase activity
GO:0033554Pcellular response to stress
GO:0031625Fubiquitin protein ligase binding
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032446Pprotein modification by small protein conjugation
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044389Fubiquitin-like protein ligase binding
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0050896Presponse to stimulus
GO:0051716Pcellular response to stimulus
GO:0061630Fubiquitin protein ligase activity
GO:0061659Fubiquitin-like protein ligase activity
GO:0070013Cintracellular organelle lumen
GO:0070647Pprotein modification by small protein conjugation or removal
GO:0071704Porganic substance metabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15710SHPRH; E3 ubiquitin-protein ligase SHPRHEC:3.6.4.- 2.3.2.27 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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