Gene information

Detail information of g236013

Location

Gene	Chr	Start	End	Strand
g236013	Scaffold_55630:HRSCAF_438716	12865	13509	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008801538.1	1.5e-13	homeobox-leucine zipper protein HOX19-like
Swissprot	Q01I23.1	1.4e-11	OsHox17
trEMBL	A0A8B7CL60	3.2e-13	homeobox-leucine zipper protein HOX19-like isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22800.1	44.32	1e-15	79.3	HAT9	Homeobox-leucine zipper protein family

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g236013	AT2G22800.1	88	49	0	71	158	111	198	44.32	1e-15	79.3
g236013	AT5G06710.1	124	71	2	43	158	153	275	35.48	2e-14	75.1
g236013	AT4G16780.1	110	60	1	49	158	113	214	38.18	4e-14	74.3

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	72	126	36.0	4e-09

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network