result

Gene information

Detail information of g237086

Location

Gene	Chr	Start	End	Strand
g237086	Scaffold_55753:HRSCAF_438839	105316	107824	-

Sequences

CDS

Protein

Gene

>g237086.t1
ATGAACATGATGAATTGTGGAGGCAATGGAGATTCCGATGGAAGAAACAACAACAATAAAAGAATCATTAATAACCATAACAGCGTAGGAGAATCAGAAAGTGAAAGTAGGCCAATAAGTGATAGAGCTCCATTTTCTGGTGATTCAGTGGATCTTTATCAAGATAATTCAGCACATAGAAGTAGAAAATATCATCGGCACACGCCCCAGCAAATTTATGAACTTGAAAAGTAAGCGCCATCTTCCAATTAATGCTTCTTTGGAATGATCGATCATATCATTTTATTAATTTTAATGTGATTTTTGTTAATGTAGGGTGTTTAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGCTACAGTTGAGTCGTCGCCTTAAACTTGACACCCGCCAGGTTAAGTTCTGGTTTCAGAACCGTCGTACTCACACGAAGGTCTACTTTTCATTCTTGCATCTAGTTAATTTATTTCAAGTCTACCATTATTCTATATATTAAACAAAATGAGATAAAAAAAAAATGTTGTATATTTATACAGACACTGATAGAACGACAAGAACACTCTATCCTGGAGGAGGAAAACCAAAAGTTAAGGAAAGAAAACTTAACGGCCAAAGAAGCAATGAGAAACCCAGCATGCAGAAACTGTGGTGGACCAGCCATGTTAGGCGAAGTAAAGCCTAAACAACAACAGCTGGTAATTGAAAACGTTCGTCTAAAGGCTGAGCTGCAACGGATATGTACCCTAGCTGGGAAGTTCGTGGGGCTTCCTTTATCGACCATGACCTTCTCATTCAACTCAGGGGGTGTACTTAGCAATGGCTTTGTTAACCAAATGGCTAACCTAGGAAATAACCAGCTATTGGTGGCTTCTAGCAATGACAATGGCAATGTGGGTGTAGATGGGAGTGGTCAAAAATCAAAGTTGCTTGAACTTGCATCAGCAGCTATGGATGAGTTGATGAAAATGGGTCTAATAGAAGAGCCTTTGTGGATGAAGGATGGTGAGAATGGGGGGGAAATGTTGAATTTTGATGAGTATAGGAAGATGTTTCAAAGGCACATAGGAGCGAAACCGGAGGGATATGTAAAGGAGGCAAGTAGGGCATCCGGAGTTGTGGTCGCTAATAGCACAACCCTCGTTGAAATGCTCATGGATGATGTATGAACTCTATTAGAACTTTAGCATACATGTATATAGTCAATATATATATATATATATATATAACCTTACTATGTATAGGATGATCTACAATGTTAGACATACTTTAGAGTCTGTACATACTGAAAATTTTGAACTGAATTACCCATGAATAAATGATGATACAGAAAGGCTGGGCGGATATGTTCCCAAGTTTGATTGCCAGCACCACCACCACTGATGTCATATATGGCAGCGTGGGTGGAACTAGAGACGGTGTGCTTCAACTCGTAAGCATTATAAACATAGATTCATTTCGAAATTTATTTTAACCTATTTCATGGGGCGCTCAACTGTTAATTTTGATATAACTGAATTATGTATAACAGATGGAAGCAAGTTTCCAAGTTTTGTCGCCATTTGTTCCAACCCGGGAAGTCAAATTTCTCCGCTTTTGCAAGCATCATTCTGATGGATCGTGGGGGATCGTTGATGTTTCTATTAATGGAATTCATGATCAATTTGCTACTGCAACAAATGGGAATGTGAGCTGCTGTAGATTTCCTTCAGGCTGCATTGTGCAGGATATGCCTAATGGCTACTCTAAGGTAATTTACATTCTCAACTTATAATCACGCTTTGTTGAATGTTATCTAAAGTTAAGTAATAGTTGTACTACTTTTAATGTCCTTAATGGTTGTATTAAGTTAATATGCATGCTCTGATGACTTTGCTGATGCTGGATTGTAGAACTTTGATTTTAATAACAAACTGTAAAAGAATTGGCTGGTTTTTCCTTGGAATTAGGATTTTTATTACATCAGATGATCATGACTTGACTGCTTATTCCATCACATTCTATACCTTAGCATTCTGTCTTCTGAGAAAGCGCAGTAATGCATTTGTGATTTGGTTTGGACAAATCTGTGACAATAAGTGTATTATCCCGCAATGTGTGAAATAACTATAGTGGGGACATTTGAATTTGTCCAAAGTTAAGATTTTCGTTCTACAAGGTAATATATATATTCATATATGATTAGCAAACCATGTCAATTTCTATAATGCTGGAGCCTGCGTAACTGTAACGTGAATAAACACAGGTAACATGGGTGGAACATGCAGAATACGACGAAAGAACAGTGCACAATCTGTATCGCTCTCTTCTCAAATCAGGGTTAGGCTTCGGTGCACAACGCTGGCTCGCCAATCTCCGACGACAATGTGAATGCCTTGCCTTTCTCTTTCCTTCTCCTTCCACCCCTCACAATCAGTCCGGTCAGTCAGGTCGGTCATCTCTCTATAGTTTAATATTTAGTACAAACTGCATCATATATTTAGTACAAACTGTATCATATACGCAGGGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008799528.1	1.1e-137	homeobox-leucine zipper protein ROC5
Swissprot	Q9M2E8.1	7.2e-123	Protein HOMEODOMAIN GLABROUS 1
trEMBL	A0A8B8ZUX4	7.7e-138	homeobox-leucine zipper protein ROC5 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61150.1	50.20	2e-137	486	HD-GL2-1;HDG1	homeodomain GLABROUS 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g237086	AT3G61150.1	504	215	10	23	500	74	567	50.20	2e-137	486
g237086	AT4G00730.1	478	207	7	31	500	106	571	52.51	1e-136	483
g237086	AT4G00730.2	465	200	6	31	489	106	558	53.12	9e-136	480

Ortholog group

Species	Genes
Allium cepa	g237086.t1
Allium fistulosum	AfisC2G07827
Allium sativum	Asa3G02921.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	62	116	65.0	3.6e-18
PF01852.16	START	Domain	249	474	159.3	7.7e-47

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009411	P	response to UV
GO:0009416	P	response to light stimulus
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009664	P	plant-type cell wall organization
GO:0009791	P	post-embryonic development
GO:0009827	P	plant-type cell wall modification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010015	P	root morphogenesis
GO:0010053	P	root epidermal cell differentiation
GO:0010054	P	trichoblast differentiation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0021700	P	developmental maturation
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042335	P	cuticle development
GO:0042545	P	cell wall modification
GO:0043473	P	pigmentation
GO:0043476	P	pigment accumulation
GO:0043478	P	pigment accumulation in response to UV light
GO:0043479	P	pigment accumulation in tissues in response to UV light
GO:0043480	P	pigment accumulation in tissues
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0045229	P	external encapsulating structure organization
GO:0045595	P	regulation of cell differentiation
GO:0045596	P	negative regulation of cell differentiation
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048468	P	cell development
GO:0048469	P	cell maturation
GO:0048497	P	maintenance of floral organ identity
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048764	P	trichoblast maturation
GO:0048765	P	root hair cell differentiation
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071554	P	cell wall organization or biogenesis
GO:0071555	P	cell wall organization
GO:0071669	P	plant-type cell wall organization or biogenesis
GO:0071695	P	anatomical structure maturation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090558	P	plant epidermis development
GO:0090567	P	reproductive shoot system development
GO:0090627	P	plant epidermal cell differentiation
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090700
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network