result

Gene information

Detail information of g237782

Location

Gene	Chr	Start	End	Strand
g237782	Scaffold_55843:HRSCAF_438929	174123	177781	-

Sequences

CDS

>g237782.t1
ATGCACTTGATCCAGCACCAGCCCTCAACCTTCCTAAAGCTAACTCTAGCCGTTGCACATCACGAGTTAACACCATATCCCGATCCCTTCACATGCCCGATAAATAATAAAGCAGCATCCATCCACTCACCTCCTTCACAGCTTTCAAAACCCCCCCTTCATCCTTTTCTTCTCTCTCTTCCTCCTCTGTTTCTCTCATCTTCTCCAACAATGCCAGCTATACCACCTCTCTTTATTCTCACCCTCCTTTTATCTTTCTCCCCTCTCTCCACCTCCGACCTCTCCGCCGACAGGTTATCCCTCCTCGCCCTCCGCTCCTCCATCGGCCCTTACCTCCCATGGAACCTTTCCGCCTCTCCATGCTCATGGCAAGGCATCACCTGCGAATCCAACCGCGTCACCGTCATCCGCCTTCCTGCCTCGAACCTAATCGGAAAAATCCCTCCGTCGATATTCTCCAACCTCTCCTCCCTCCACACCCTCTCGCTCCGCTACAACGCTCTCACCGGCCCTTTCCCCGATTCATTTCCCTCCCAACTCCGTAATCTTTACCTGCATCGAAACAAGTTCTCCGGTTCTCTTCCTGGTCCACGTCTAGCTAACTTGACCAACTTAGTCCGGCTGAATTTGGCGGGTAACAGATTTTCCGGTAAGATACCGGAAGAGATTAACCTGCTAACTAGATTAGGAACTTTGTATTTGGAAGACAATGACTTCGAAGGGGAAATCCCAGATATGAAAAATCTGGACAGTTTGAGGCAGTTCAACGTTTCGGGTAATGAAAAGCTAAACGGATCTATTCCTCAGAGGGTCAGATCTATGCAGAGGGACTCATTTTTAAGCACTGGTCTCTGTGGCTCGCCTCTCGCAAAATGTCCATGGGAAGTCGACCCTTCTCCTTCGAAGGGGAAGAAGGGATTATCAGGTGGCGCAATTGCCGGCATAGCCATTGCTGCTGTTGTCGCTTTCTTAATTCTACTTTGTTTAATTTTCTTATTATGTAGAAAGAAGGGATCTAAGAAAAGCTCGACTAGGTCAGCTGATGTGGCAGGTACTTCCGTTGAAAAGGCTCCGGACATGGAAATTCCTCTCACAGATAAGAGGGTGGTCGGAGATGGTGCGCCAGTGCCTGCGATTGTTCCTCCGGTTGCTCCAGTTACAGAAAACGGCGCGAAGAAATTGATATTCTTTGGATCGGGGGAGAAGGTTTATGATTTGGAAGACTTATTGAGGGCATCGGCTGAGGTATTGGGGAAGGGTACATTTGGAACAGCATATAAAGCTGTGCTTGAAATGGGAGTTACAGTGGCTGTGAAAAGGTTGAAGGAGGTTAACATTACCGATAGAGAGTTTAGAGAGAGGATCAATGTGATTGGGAATATGGAACATGCGAATTTGGTAGGACTAAGAGCTTATTACTTCAGTAAAGAGGAGAGACTGCTTGTCTATGATTACATGAGCATGGGTAGTTTGTCTTCTCTTCTTCATGGCAACAGAGGATCGGGCAGGACCCCACTAAACTGGGAAACCCGCTCCGCGATCGCACTAGCAGCAGCCAAAGGCATCGAGTACATCCACTCTACATCCCCAACCGCTTCCCACGGCAACATAAAATCGTCAAATGTCCTACTGGACCGGTCCTACGAAGCCAAAGTATCGGATCACGGGCTCAATACTCTCGCTGGCCCATCACCCACTCCAAACCGGGTCGCCGGGTACAAAGCCCCAGAGGTAACCGATGCCCGAAAGGTCTCTCAAAAGGCGGACATCTTCAGCTTCGGCGTCCTCCTCCTTGAACTCCTTACCGGAAAAGCCCCTGCGCAAGCCGCACTGAACGAAGAAGGGGTCGACTTGCCAAGATGGGTACAATCGGTAGTTCAAGAAGAATGGACCTCCGAAGTTTTCGATTTGGAGCTGCTCCGATATCAGAGTGTGGAAGAGGAGATGGTCGAACTATTACAGCTCGCGATCGACTGTGCGGCCCAGTATCCGGATAGAAGGCCCACGATGTCCGAAGTTGTTAAGAGGATCGAAGAAATTCGACAGTCGAGCTTGTTACCACCTTCCGATGATAAAGAAGAGGGGCATTGA

Protein

Gene

>g237782.t1
ATGCACTTGATCCAGCACCAGCCCTCAACCTTCCTAAAGCTAACTCTAGCCGTTGCACATCACGAGTTAACACCATATCCCGATCCCTTCACATGTTCATTCCTTTTGTTCTCCTCACATCTTACCAACCCTTCTCATCTTCCTCGTCTTTTCCCTCATTTAGAGGTGTGCTTTAATTAGAGATATTTGAATTGTACATTATAACTTAAATTGAATGTACCCTTTTTTGTTTTGAGCAGCAACCACAACCGATTTGTATACAATAACATTTTTTTTGGCAAATCCTTGTAAATCAAGGAAACAATAGCCAGAAATCTTATTAAAAAAATTTATTACGTCTACTTTTGCTCTGGTAGATTTTTCCATTTAAAGACTTTTGTAACCTTGAAGTTTCATTACATATATAACCCACATTGGATCTTCCACAGTTCTGTTAATCTAAATATTTAATTTGATGTTGAATGATTGAATTTTTATGGCAATGAATTTTCTATTACCATAAATTACTAGAAAATTAAATACATTTTGCGTTAAGTTTAAAGTGTAAAAATCCTTGAAAGTTTAAGACAAAACTCTTCACAGATTTAAAACAAAGGTCCGTGCAATTTTAAAAAATATAAGTCTATCAATAATTTAAAATCACGGTGCAATCATCGATTCTAAAATAACCAGACATTCCGGGAAATATATTATTCTCGAGTTTTCTAAAGTGAACAATATATATAAAGGAATGTAAAATTAGTTTCCACTCTTTTATTTGCAAACGTTTTGATCATAATCACATTAATCACCTTTTTCATTTAAAGCAAATTACGAGCATTTCCAAAAAAAGCCAAAGTGAACACATATGAAAACCGTAATTAGAATGTGATTATCTCTAGAAATTAGGTCGAGTAAAAGTCGTACAGAAAATCAAATCGACGTGAATTTATCACGCTATACACACAAGGCCCGATAAATAATAAAGCAGCATCCATCCACTCACCTCCTTCACAGCTTTCAAAACCCCCCCTTCATCCTTTTCTTCTCTCTCTTCCTCCTCTGTTTCTCTCATCTTCTCCAACAATGCCAGCTATACCACCTCTCTTTATTCTCACCCTCCTTTTATCTTTCTCCCCTCTCTCCACCTCCGACCTCTCCGCCGACAGGTTATCCCTCCTCGCCCTCCGCTCCTCCATCGGCCCTTACCTCCCATGGAACCTTTCCGCCTCTCCATGCTCATGGCAAGGCATCACCTGCGAATCCAACCGCGTCACCGTCATCCGCCTTCCTGCCTCGAACCTAATCGGAAAAATCCCTCCGTCGATATTCTCCAACCTCTCCTCCCTCCACACCCTCTCGCTCCGCTACAACGCTCTCACCGGCCCTTTCCCCGATTCATTTCCCTCCCAACTCCGTAATCTTTACCTGCATCGAAACAAGTTCTCCGGTTCTCTTCCTGGTCCACGTCTAGCTAACTTGACCAACTTAGTCCGGCTGAATTTGGCGGGTAACAGATTTTCCGGTAAGATACCGGAAGAGATTAACCTGCTAACTAGATTAGGAACTTTGTATTTGGAAGACAATGACTTCGAAGGGGAAATCCCAGATATGAAAAATCTGGACAGTTTGAGGCAGTTCAACGTTTCGGGTAATGAAAAGCTAAACGGATCTATTCCTCAGAGGGTCAGATCTATGCAGAGGGACTCATTTTTAAGCACTGGTCTCTGTGGCTCGCCTCTCGCAAAATGTCCATGGGAAGTCGACCCTTCTCCTTCGAAGGGGAAGAAGGGATTATCAGGTGGCGCAATTGCCGGCATAGCCATTGCTGCTGTTGTCGCTTTCTTAATTCTACTTTGTTTAATTTTCTTATTATGTAGAAAGAAGGGATCTAAGAAAAGCTCGACTAGGTCAGCTGATGTGGCAGGTACTTCCGTTGAAAAGGCTCCGGACATGGAAATTCCTCTCACAGATAAGAGGGTGGTCGGAGATGGTGCGCCAGTGCCTGCGATTGTTCCTCCGGTTGCTCCAGTTACAGAAAACGGCGCGAAGAAATTGATATTCTTTGGATCGGGGGAGAAGGTTTATGATTTGGAAGACTTATTGAGGGCATCGGCTGAGGTATTGGGGAAGGGTACATTTGGAACAGCATATAAAGCTGTGCTTGAAATGGGAGTTACAGTGGCTGTGAAAAGGTTGAAGGAGGTTAACATTACCGATAGAGAGTTTAGAGAGAGGATCAATGTGATTGGGAATATGGAACATGCGAATTTGGTAGGACTAAGAGCTTATTACTTCAGTAAAGAGGAGAGACTGCTTGTCTATGATTACATGAGCATGGGTAGTTTGTCTTCTCTTCTTCATGGTGAGTTTTCAATTTTTATTTTACACCCGTGTACTGCATTATTTTGCATCATTGCTGGTTAAGTTTTAGTTATCATCTTATGTTTTATTAGTTTGAATTCATTCGGTTGAATTAACAACATAAGAGATGAACGTTTGATTCAATTTTGTTTTTTTCTTCTTGACGTTGAAATTCCAACGGGAATTCGTGACAAACACAAACTAACAAATTTATCGCTTAACCGTTTTATATTCTACTCTTTTATACCATTCATTAATGCATTTCACAATTGGGCACTAGATTGGTTGACATTTCATTCGAATGTACGTCAACGAATGGAAAATTTTTCATGTTTTGATTGGGTGTTGACATATGCTTTCTTAGAAGCAGTCAACTGTTTGGCGTATGTATTTTCTTTCTCAAATATTCTTCTCTTCTAATCCGTTTGATTCGATTCTACGTGATGACTTCAACCATTGATTTTCACATCCACCATCATAAAAAGAATTGGTCTCACATTTTAAACTGGACATATTCTATGAAAAAACATACCTCCAGTAAGTAGTAGTCCTAAATCCGCGTAACAATACCTTTCGTGTTGATCACAACTTTGAATATGTAACTATGCTTAACTTCTTATTTGGTTCAGTCAATCTTGTTTTACTCAACTTTCACGTCTTAACACTTCTTTGACGTAATGCATTTATAGTAAGGACAAAATTGACATTTTACAGGCAACAGAGGATCGGGCAGGACCCCACTAAACTGGGAAACCCGCTCCGCGATCGCACTAGCAGCAGCCAAAGGCATCGAGTACATCCACTCTACATCCCCAACCGCTTCCCACGGCAACATAAAATCGTCAAATGTCCTACTGGACCGGTCCTACGAAGCCAAAGTATCGGATCACGGGCTCAATACTCTCGCTGGCCCATCACCCACTCCAAACCGGGTCGCCGGGTACAAAGCCCCAGAGGTAACCGATGCCCGAAAGGTCTCTCAAAAGGCGGACATCTTCAGCTTCGGCGTCCTCCTCCTTGAACTCCTTACCGGAAAAGCCCCTGCGCAAGCCGCACTGAACGAAGAAGGGGTCGACTTGCCAAGATGGGTACAATCGGTAGTTCAAGAAGAATGGACCTCCGAAGTTTTCGATTTGGAGCTGCTCCGATATCAGAGTGTGGAAGAGGAGATGGTCGAACTATTACAGCTCGCGATCGACTGTGCGGCCCAGTATCCGGATAGAAGGCCCACGATGTCCGAAGTTGTTAAGAGGATCGAAGAAATTCGACAGTCGAGCTTGTTACCACCTTCCGATGATAAAGAAGAGGGGCATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926113.1	9.2e-169	probable inactive receptor kinase At1g48480
Swissprot	Q9LP77.1	2.4e-137	Probable inactive receptor kinase At1g48480
trEMBL	A0A6I9RGC9	6.6e-169	probable inactive receptor kinase At1g48480

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G48480.1	54.43	0.0	640	RKL1	receptor-like kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g237782	AT1G48480.1	643	248	15	73	681	12	643	54.43	0.0	640
g237782	AT3G17840.1	629	235	15	93	683	30	641	53.90	1e-176	617
g237782	AT5G16590.1	629	268	13	77	687	12	620	51.35	3e-166	582

Ortholog group

Species	Genes
Allium cepa	g237782.t1
Allium fistulosum	AfisC6G05172
Allium sativum	Asa8G06267.1
Arabidopsis thaliana	AT1G48480.1; AT3G17840.1
Oryza sativa	LOC_Os03g12250.1; LOC_Os03g50450.1; LOC_Os04g38910.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	95	128	28.2	1.6e-06
PF13855.3	LRR_8	Repeat	135	190	30.1	2.6e-07
PF00069.22	Pkinase	Domain	414	675	128.6	2.5e-37

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0016020	C	membrane
GO:0005773	C	vacuole
GO:0046658	C	anchored component of plasma membrane
GO:0005618	C	cell wall
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0005774	C	vacuolar membrane
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005911	C	cell-cell junction
GO:0008150	P	biological_process
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0009608	P	response to symbiont
GO:0009610	P	response to symbiotic fungus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0010033	P	response to organic substance
GO:0031225	C	anchored component of membrane
GO:0030054	C	cell junction
GO:0030312	C	external encapsulating structure
GO:0031090	C	organelle membrane
GO:0031224	C	intrinsic component of membrane
GO:0031226	C	intrinsic component of plasma membrane
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044425	C	membrane part
GO:0044437	C	vacuolar part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044459	C	plasma membrane part
GO:0044464	C	cell part
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0055044	C	symplast
GO:0071944	C	cell periphery
GO:0097305	P	response to alcohol
GO:0098588	C	bounding membrane of organelle
GO:0098805	C	whole membrane
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network