result

Gene information

Detail information of g238513

Location

Gene	Chr	Start	End	Strand
g238513	Scaffold_55916:HRSCAF_439002	81553	90497	+

Sequences

CDS

Protein

Gene

>g238513.t1
ATGAGAAAATTATTGAAGGAGGTGGAAGAAAGCATGACAAAGCAAGAAGGAGGAGAAAGGAAGATGGTGATTGCAAGTGAGGTTAGGCTTAGGTTCTTAGATCTTGGTAATTGTGTATTAAAGGTGAGTTAATACCTCACTTTTAGTAGAAAATATAACATTGATATGTTGTATTTGATTGTATTAATGTTGTTTGAATTGTTAAGTAACATAAGTGTGAACACTGATTTTGATCCGTGTTTTCAGAATAAGGGGCACATAAGATCCATATACAGATTGGAATGTACTTGAATGGACTTATATGACATGTGACTAGAATTTGAACAAAGCACATAGGTTGTAGTTGAACATAGGTTGAAATATGACTTGGATTTAGAAGTGCACTTATAGCAATAGTCGTTATAGAAGCAGTTCGGAATTGGCTTGTTTTTTACAATTGTTATAGAACTTTGTAGAGAGATCCATAGGTATGTTTGTTACTATTAAAAGCTTGAATAGTAAAAAAAAGTTAAGTAACATCTCGAAAATGGGCAAAACATCACTAGTGCAAAACTACACCGTTTAATCTTGGTTTTTGGACTTCAAATGTTTCAAAAAGGCTTTAAGTTTAAGCGATTTGTTTCATTCTTTTAAAAAGTATTGCCTAACTATTTTTAAAGTATTTAAAAGAAACTTGAGATATTTATGAATTTTTAAGAATTATGTACAAACTTTTAAAGAGAGGAATTGAATATGCTTAACACTAATAAGCCGATGTAGTAATCTTATCTATTTGTGAGAGTTAAGAATGATGTTGAGTAGGGATGGAGAAATAGAGCTGTAACCTACTAGGCTTCCCTCTTAACCAAGGAATAAGTAAGTCAAAAATGTCGAAAACTTGTTAGTCGAGTTAATTCCTTATTGTTTATGGAAATCATGAATATTGTACTTAGTACTATAAGCCAACGAGGTAGACTTACCTATTTGTGAGATTTAAGAATGAAGCGTCTAGGCAAGACTTGTAGCAACCAGGTCCAAACTTTGACTTTGTTCTTGGGCGAGGAATAGTTAAGTTGGAATGTCGGAAATGAGTTAAACGTATGAATCGTGATTTTCATAAGCAATTGTTTTGACAAGATAATCGATTAGTCGATTATCGAACTTGACCAAATATTGACTTAAGAAGTCATCGTAAAGCTTTGCGATTTCATACCAATAAAACCCCCGAGGAGGAGTATTGGTACGAAATGTCTCTAGCTTTCACTTACTTCTGAGAGAAATGGAATTGAGTTAACCAAAAATTCATCGATTGGTTTTGGTGAGTCCAATAAGTGGGAAGATGTACTTATATGTGATGACTCAAACATGAAACCACTTCAAAACCATAAACGTGATATAGGCTATAGAAAGTTGAGAAGTGGAATATTATAGAGTTGAACTACTAATCCTAATGTTAATTCCAAAGGAAAGGTCCGCGTTAACATTTCGAATGATGCTATCATGTTGGACTATCTATCTTGAGGAGTACTCTAAGAGAGAGACAGCATTAGCATTTGTTAGAGGACTTATGTGGGGAACCTATATGGAGGTTTGAGATCTGTTCGAGATGCTAAAATCCATGTTGTGATTCGTGATCTATTTTAGATGAAGGAATCCATTTGGGGATTCATGTTCTATTCGAGTGATGAGGACTTGAGTGATAGATGCCGAACATAGCCTGACATCAGGAAAAATGATAGAAACCATGTAAGGGACATGGCTAGGGTGGTTTAGCAACCTCAAGGGTATATCAACTCCATGTCTAGAGATGCTTATCGATATATTGGTACCATGAGTTGGTATGACTCGGATCACACACCGAGGGTGGCCCGGTTATGTTTACCTTAGAGTATATCCCATCTAGAGAAATATGTTACTTGGAAGGTAGTTTCTGATCCTTGTCATGGAGTTTGGATTCTGCTAGATCCGAGGAGATCTCTATGGGAAAATTCATTATGCAAACGTGCTTTAGCGATATTGATTATATACCTATTATTGTTGTAGCATTTACACAACAACTATTTGATATGATTTATGTTCTAACTCTAGACATTATATATCATATCACTATATATTAAATTTAACGAATGGTTGTTTTTTTGAGGGGAAAACTGTTACGGAAATCAGTACGATCTTAATGGTTATTGTTACATATCATATATGATTTGAGTTTCTCACAATGATTTACCAAACTGATACATGTGTTATTTTCTTGTAATGCTTAGGTCAGCCCCATGTATGTTTCAGGTTTAGATTTGGACGCTTTGGAGCTTATGGAAAAGAGCTGAAGAATTATCAACCGCAGTATTCTAATTTCTGCTGCATTTCTATATATCAGCATTGTGAGGACAAGATGTTATAACTATCCAGGCTGATGATAGTACTTAGGCTTTAGTAACTTTGATATCTCTATACTTAGAGTGATCCTTTATTCCATTCCTTTGATATTATATATTATCATTCCGTTGTGAGATTCTGATATTATGTTCTTCTTTTCTTGTTCTATTCATTTTGTTTTATTTTACCCTGACAATTCGTCTTTCCGGCACTTGGGTGCTTGGCACATGAACACCGTGGATGTATTGGTGTAAACGTTTGAGGGTCGAAAAGTTAGGTCATTACAGGGTAGACCGTTTCTATGTTGGTAGAGGTGCAATGTTTGTAGCCTCGATACGTTTTATCTAGTGGTGTACTGTACGGAAGATAGTGCTTTACCTTGCCATTGTTGGAATACATTTTCCAATACGTGCCTTAAGGACTTAGTTGCATACTAAATATGCAGGGATGTGAGATGCAAGCATTTTAACTATGTTATATATGTATTTTTAACCCAGTCATTATTATAATATCATAAAATTTTCTTATAAAATGATCTGGTTATCGCAAGGTAAAAAATCATTTAGCTTTATGTATGGCATGGTGTTACGAGATATCTTTATTTTGAAGTATTTTATAAATATAAAAGCCATATGGTTTAAGTTTCTCATGCTGGTTTACGAGACTGATCCATGTGTTATTTCCTTTTAATGCTTGGGTCAGCCCCGTGCATATTTCCAGTTTTATTTTCTTACAGTGCTCGGGTCAGCCCCATGCATAAAAACCATATGTATCGTATTTCCCAGCATTTATGAGGCGAGCTATTATAACTGTCCAGGCTGATGATATGTTAGTTCACTCTGATTGATGTATGTATATTACAGTTTTTTCGTAAAGTTTATTTATATATTATATATTACTCGTCACGATATGAGATTCTGTATTTTTTTACTTTCCCCACCACCCACAATTTGTCTTTTCGGCACTTGGATGCTCGATACATGAATACTGTACATGTATTAGCGTCGACTTTTGAGGGTAGAAAAGGCCGATCATTACAGGCTCTATATTCATCCAATCATTCAAACCATACGGAGGTCTCTTAGCCTTTTCATGAACAATTTTACATTTAACCCCTTTTTAAAATTTTAGTTTCAATTTAGTTTAGAAATTAATGAGTACTATTAAAGGTTGTTAGATATGAAGGATCACTCATTTATTATCAGTTTTATTTAGAAATTTGAAAATCTCATCTTAAATGACCCCACATTATTCTCTTTTGTTTTTCTACCTATCTTAGTTCATAATTTATTATTTCTCTATTTCTACAAATTAAAAAATTTCGGCTTCATTGTTATATTCTAAATTTTGTCTGGTAAAAATTAATATTTTGAATGTTTCTTTTGGTTTCTTTTAATATGCAGAAAATTATTTAGCTTTTCCTAGGTTTAACCAGAGTGTCTTTCAAAAATGGGACCATTTGATTGCCAAGCAAAATGTAATAATATGATTATCTCTTTTCAAAGTAAGTTTTTTTCGAAATATTAAGTAAATTTTTATCTATTTATTTGCGTAGTTTGATTATTATATCTCATCTCCCTTAGAAGGGTTATGTTCCTATATTTTTATATTATTTTATATATCTAATCATCGTTAAATGTGCTTATTTTTAATGTTTTTGTAAGAATGGTTGCTAAATATGAAGAATCGCCCTTTTATTATCAGTTTGCATTTAGTATAGGAATTTGCAAATCTCATCTTAATTGACCCATCATTCTTCTCTTCTCTTCTTTTAACCATCGTAATTCATAAAATATTTTCCTTTATTTCTACAAATTACAACTTTTGTGCTTCTTTGTTTAACTCTAATTTTTTTTATAAAAAAACTAATATTATGTATATTTATTTTGGTTTATTTCAAGTGGCAAACAATTGTGTAATACTCCATGCATTTAAATTGCTTTTCATTATGAGGCCGTTTGATTATTAAGTCAAAGGTCAAAATATGATTATCTCTTTTCAAGTCAGTTTCATTTCAACATATTAATTAATATTTATTTGTTTGTTTACCTATTTTGATTACTATATCTCGCCATCTTTAGAAGGATTATATCCTATGTTTCATATTTATTGCCGATTGTTGTGTCATACCAAAGTATTGAAATTTCTTACTATGTTACGAACTTTGAAAACGTTGTGTAATATATTATACCTCATCATCTTTAGAAGGTTCATGATCCTATATTTTGGACTAAGTTTTATGTTATCATACTTAGAAAATGTAATGATGAACTATGATAGTACAAAGTGATTATTGAACTATGTTGCTTTATCATATTTTATGTTAGACGTACATCTACTTTGTCCATTTCACTTGTGCCTAGCCCAGTTTTGGAAACTCTACATCAACCATGAGTCAACGAAAATAATTTTCAATTTTGAGTACTATAAACAATTCAAAGGTCTCTATTTATGAATGAACAATTGTTAAAGCTCCATAAATTTAACTAGAATGTCTTTCCAAAATCATTTTATTACCAAGTAAAAGGTTAGGATATGATTATTATGTTTCAAAGTAAAGGGAAAAGATCTAGAAATTTACCGCTAGTTTATTTACCTATTATTATTATTGTATATATTATCATTATAATCCTATATTTACTATATTTATATTTACCGTCAACCGTTGTGATTGATTAAGATATTGAAGTTTGTTACTATGTTATAAGCTCTGAATTTATTTGTGTAATATATTATGTCTCATCTTAGGCTGATGTTTCAATTTGATGTTATCACGCTTAGAAAATATTAATGATGAACTTTTATAATAGAAAGTTATTACTGAACTACGATACCTTAACATAGATTATATTAGGCTTTCATGCCCTTTGTCTATTTCACTTAGGACTAAATCATTCTCCCTTTTTTGGTAATTGTACATTGACCATGAGTTAACATAAAATGATTTTAAATCTTGAGTAATATTAACAATTCAAAGAACCCAGCTTATACTGAGCAAAAATATGAAGGAATCATAGCTTCACCCTCAACCAAATACTATTTATACGGTATATAATACTATCTATCGAGAATTTACATTTATGTTTTTTGTGAAATCACATATTCAATTCTTGTTAAAGATACATGTGATGATGTTTTTTCATATTTTTGTCACTCATCTCATCTTATCATTTATTAGCTAATGTTATAGGCCATTTTTGAAAGATCATGAATCTATATGCATGAGAGTGAAGAGGGATAGAATTAATCAATTATTTCTAGGTTAGAAGTCCTTAGCATTTGAACAAAAGGATATTGGTATACGAATAGTTTTATGTGGGATTCCTTAAACAAATTGTAATGAAATTCTGACTCATATTTCATATATGTGTCTAAGGCATATCAACAATATTTTAAGATTTCCAATAAAATAGTTGGATATACATTTTACTTTTAATTGATCTACTTTATTTTTATTTTCTACTTTTTTTTATTTTTTTTATTGTAATTTATGGTGGAAAAAATTCACCGAAAAACTAGACATTACATCAAAACAATTTAATTTATTACTATACGATTGATCAATAAAGTTTTTATATGTATCTGTATGTAAGTGTAGTTGCTTAATGAGATCTCAATGTACATATTGATGAACATGGGTGTGCTTACTGAAGATGAACGTGAAAGTGAGACCACAGTTGTGCACATCCCTAATCTCAGGTAGTGCTCATACATCAATCCATTCCAAAAACGAACAATGACCAAGATTTGTTTTCTTAGGGTTCAGTTTCTGAGTTGACGCACCCTAATATAAGATAAATTAAATAAGATTCGTTATTTATCTGATTAAAGTATATAAAAGACAACCATTTAGATCCAAATGTTACGGCGCTAAAAAGAATAAAGCGAAAAATTACAAAAAATATGGTTGGAAGAGAAAAAATAAGGACATTAATTGCAAAATTAAAATTACTAGCATGGTGAATTTTTTCTAAAATAGTAATCAAGAATGATGTTGCATGAATGAAAAATATAAGGAATTTGAATATAGTAAGATTACAAGTTAAATTTTCATCATTTATTATTATCAAAAAACAATTTCTGCCCTTATAATATTCACCTTCATTAATGATATTTAGGTTGTGATAAAAACCATAAAGTTTTTGCAAAAATAGCATACCTTAAATCAGTTTGTCGTAATTTTCAGTTAGTACAATCGACTTTTAATGAAAACCTATGGGGGCATTTGATAAAATATAGGCAGAATGGAAAGTCGACAATCATCAAGACCAAAATATTTGGATATGACAAAGTAACCACATTATTTGGAATTGTTGAAGGATTAACCTAGACTTTTCATGAAGACCATTGTTATTCCATAACTATGTGTTGCTAAATTTCATATTGTAATGGACATCTGCCATGAGCTCTATTATTGATGCTATATATATATGTGTGCAAGAATTAGAGGAGTATTTTAATATGTTAATATGTATAACTAATGTCCAATAACTAATAGTTTTTTATAGTTGTTAACAGCGTATTTAATATGTAAGAATTAGTAGAATATTTCGTTCATGAAACATTCTGTATAGTTCCAATAAACTTTTTCAATTCATATTTCTACTTTTATTATCATATCATTTTGTTTGTGTACACACATCAAACATCAGTTTTGATAGAATTACATCTATTTCTTCTTGATTTTCTGTATAAAAAAAATATCTTGAGACGTTTTGTAAGGTTATAATATTTGTTGATTGAAAGTGAACTATGTTGCATTGTTAAAAAAGAAAAAAATAAACAATCCAACAATCGATTTATCGTGTGTCATGCTTTTGATACTATTATTTACATCCAACGGCTCTACAAATGCAATGTTCAATAACATAAGTAGAGGTAATATTCACAAAGTGTGGGATATCTAATATTTTTCAGATAATTGTTGCATATTCAAATGAGTCAAAATATGATGTTATGTGTTTAAACAAAATCTGTATTTAGCTCCATTAATATATTTACAGAAAATGTTTCAATCATTGTATGGTGGGTCCTATAACAAAATTGTGTATGTAGCCGGTTTGTATTAGTAATAGAATTTTCCAATTTGTTTTTTATGGCGAAGTTTTAAATGAGATATCTTTGTAGGCTATTTCTATTCCCACCTCTTTTTTCTCCTTTAGTAATAATCATCCCATCTCATTTTTTTCCTTTCGTCATTCAATTCACTTTAAAAATGTTCTCGTACGTTTTAATCCACGTTCAGCTTTGACATTATTTATTCACGACCGCGCTCGGTTCGAACTACATTTTTACACAAACCCTACTCGATCTGAACTAGGCTGTTACACGAACCTAGTTCGGCCTAAACTATATTGTTGTATAAACATTGCTTCTTTATAGCTTTTACACGTAATTTTTTTTAAAACGTCATGAAGTAACGGTGCGTGATAGGAGAAATCGAGGTGCCGCCATCTTTGTAAAATACATAGAAACGTGTAAAACTTTATTGGATTGTGGCTGAGGTCCGAGAGAGTAATTTTACGGATTTTGATCCTTCCCAGCCTCTCCAGTTTCCACAGAAAATTAATTCACTACGCATAAGAACTTCATTAGCGACAAAAATACTAAAATCCCCAAGCCATTCCCACAAATCCAACGGTCTAGATTACTCATAGTTGGACCCACTCACCACCAAAAGTAAACCATCCGGCTCCACCGTCCGATCTTCAACTTCTCATAACAATAAAGCAATCTCTTTGGTCCCACCTCTTCATCCTCTCTAGGGTTTTATTTCCTCCCGAATTTATCCTCTCAATTCTCAATTCCACCCCAAACGCATAAAATCCAATAAAATGATGGATCCTTCTCCTTCCTCCAGCAACAGCAATAACAACCACAATCAAGACCATGACGTCACCACCGCCTCCATCGACTCAGTGGCAATCTTACCTCCACACAACCCTCAATTCCACCACCGTCTAATCATGCCCAAACCCGAACCGATCGACTTGTTCGCCGGCACTCCCAATACCCTTCCGATCGTCCAACCCCGTCAGCCCGCCAGAACCAAGGACCGCCACACCAAAGTCGAGGGCCGCGGCCGCAGGATCCGCATGCCCGCCGCCTGCGCCGCCCGCATCTTCCAGCTCACTCGGGAGCTCAACCACAAATCCGACGGCGAAACAATTCGCTGGTTACTGGAGCATGCCGAACCGGCGATCATCGCCGCCACGGGCACCGGGACGGTACCGGCGATTGCAACGACTGTGGGTGGGACTCTGAAGATTCCGACCACAGCGCCGGAAAGCGCTCCGGTAGGTTCGACGTCGTCGGGTGGCGGGGGTGGGGAGAAGAGGAGGAAGCTGCAGCCGACGAGGGCGGTTGGTGGGTCGGTTACGACGGGAATGGCGCCATTGATGCCGATGACGTGGCCGCCGGCTGTGTGGATGGTGCCACAGCCGGCGGCGGGGCAGGAGGTCATCTGGACGTTTCCAGCCATGAGGCCTGTGTATTCCCAGGGGGAGGTGCAGGTAATGGAGGAGGAGGAGCAGCATGTGGCAGAGGATGAAGAGGATAATGAGCAGAGATTTTCAGATAACAGCCAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	THU58201.1	2.6e-43	hypothetical protein C4D60_Mb03t11660
Swissprot	A2YXQ1.1	5.6e-35	Transcription factor PCF2
trEMBL	A0A4S8J9A5	1.9e-43	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45680.1	54.22	1e-37	153	TCP9	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g238513	AT2G45680.1	166	51	5	116	265	69	225	54.22	1e-37	153
g238513	AT5G51910.2	130	38	3	116	238	52	179	63.85	1e-35	147
g238513	AT5G51910.1	130	38	3	116	238	52	179	63.85	1e-35	147

Ortholog group

Species	Genes
Allium cepa	g238513.t1
Allium fistulosum	AfisC4G06318
Allium sativum	Asa5G05379.1
Arabidopsis thaliana	AT2G37000.1; AT5G51910.1; AT5G51910.2
Oryza sativa	LOC_Os04g11830.1; LOC_Os08g43160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	121	189	99.6	2.3e-28

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0008361	P	regulation of cell size
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032535	P	regulation of cellular component size
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048519	P	negative regulation of biological process
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090066	P	regulation of anatomical structure size
GO:0099402	P	plant organ development
GO:1900055	P	regulation of leaf senescence
GO:1900056	P	negative regulation of leaf senescence
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000024	P	regulation of leaf development
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905622

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network