result

Gene information

Detail information of g239563


Location
GeneChrStartEndStrand
g239563Scaffold_56085:HRSCAF_4391711609040066+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrQEU57405.14.1e-230beta-amylase
SwissprotQ9FH80.11.6e-170Beta-amylase 2
trEMBLA0A5J6EFV02.9e-230Beta-amylase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G45300.156.613e-170 595BAM8;BMY2beta-amylase 2

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Ortholog group
SpeciesGenes
Allium cepag239563.t1
Allium fistulosumAfisC2G07977
Allium sativumAsa6G01291.1; Asa6G01292.1
Arabidopsis thalianaAT5G45300.1; AT5G45300.2
Oryza sativaLOC_Os02g03690.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01373.14Glyco_hydro_14Domain102473259.83.8e-77

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003824Fcatalytic activity
GO:0004553Fhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016160Famylase activity
GO:0016161Fbeta-amylase activity
GO:0016787Fhydrolase activity
GO:0016798Fhydrolase activity, acting on glycosyl bonds
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048831Pregulation of shoot system development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K01177E3.2.1.2; beta-amylaseEC:3.2.1.2 Starch and sucrose metabolismko00500

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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