result

Gene information

Detail information of g242641

Location

Gene	Chr	Start	End	Strand
g242641	Scaffold_56447:HRSCAF_439533	1628954	1634092	+

Sequences

CDS

Protein

Gene

>g242641.t1
ATGGCTGATCAATCTCCCAATATAGCTCCACCTCCTAATAGCAGTACTGCTAATTCAAATACTTCATCATCTATGGCTCCTAAATCGTCACCATCACCACCATTATCACCCCCACCGCCACCATTGTCACCTCCTCTGCCACAGAACTCACCTCCACCTTCAAACTCTACAAATAAAAACAGCACTCAAAATGGAAAAGGCTCGTCCTTTATATCACCTCCTGCACCACCACACGATAAACTACCTTCCTCATTTCCTCCTCCTTCATCACCACATAATTCTGAAAGTAGAGAGAATTCTACAGGCAGTGATTCGTCTTCAGATGTGCAGTATTTGACTATCGGCATCCCTGTAATTGCTGGAGTTGCCGGTGCAATTGTATTGCTTATCATTATTGTTGGCATTGTGTCATGCATTTCGAAAAAGAGAAGAAAGAGGAAGCCTCATCATCATATGCAGTATTATGCAGACTCCTCAGGTCTAAAAGGTATTGTCAAGTTAGTGGTCTTCGCAACATATTGTAACAAAAGGAATAACTAATCTTACGTACCACCAATCTCATATATATACCACAATTATTTCAAATATCCTGCGATGTGGGACTTTTAACTGTCCAATCCACGTACCAACTCCATTTACAATACGAGACACGCCTAACAATCTTCACCTTAGCGTGCATTACTCCTTTGGAGCCTTGATCATATTTCCACCTCGACGAGCATCCCATGCTCAAGCCCCTTTGGAGCCATACTTCGGTTATACCGTATCATATTGGTCCCTCAAACCATGAAGCTCTGATATCATGTTGAGTTTCGGCATTTCCACGTTCGATACACGTTCGCTCCATAGTGTCTAGGTGGCATCAACGGTCGAAATATACAATATCAGCGTCCCAATTGAATATTCCTTCACCGTCTTCCATCAGGAATATAATAGGTCTTGGCAACACATTGTAACAAAAAGAATTTCTAATGTTATGTGCCACCAATCTTATATATATACTATGATTATTCTAAATATCGTGCGATGTTGGACATTTAACTGCCCAATCCACGCACTTGCTCCATTTGCAATGCGAACCGCCTCTACCATATGTTGGTGGATACAATAGACTTCACCATTTTATTTACCGTTAAACCTTGAATAACAACAGATGATATGTATTTTCTTTCTTTCTTTCTAGACAATCGAAGATAAATGGTCTAGTATCCTATTTTCAAATTTCATGAACTTATCTATAGTATATCTTGAATTACTGAATGCAAGACCTATGATTACACAACCAGACGTGCTATCATTTTTATTAAATGTAAAGGGAACAATAAAACTAGAACAAAGTGTCTAATATTAAACTAACAACTAACATCCAGACTAATATTAAACTTTCTAGATCTTTTCACAAAATCACTGACAAATTCATGAAAGTAGTCTGTCTATCCGTGAGTAGAAATAGCTTTAATTGCTGACCTCGCCTAACTTATATAATATAAGCTCAGGGTTTTGCTTTTTGAATAAAAACCGACTAGTTTAAAAATTACGTTTCTCTTTGCAGTGACTGACAGCGCCTACTACATCGGTGCACAAACTCAAACCAACCAGGCCACGACAGATGACATATGGCATCCTTCGCCTCCGCCTCCACCACCACCCATGACTAGTGAAGACATGACAAGTTCGGGCCCGCATGAGCCTCCTCTGCCACCACCTTCCCCTATCATGGTATTAGGGTTCAACAAATGCACATTCACCTACGAAGAACTATCAGCTGCCACTAATGGGTTCGATCAAAGCAATCTGCTGGGCCAGGGCGGGTTTGGATATGTCCATAAAGGAGTGCTGCCTAATGGAAAAGAGATTGCTGTGAAGTCGCTTAAGTCTGGAAGTGGGCAGGGAGAAAGAGAGTTTCAAGCGGAGGTTGATATCATTAGCCGTGTTCATCATAGACACTTGGTTTCTCTTGTTGGGTACTGTTGTTCTGGAAGCGCTAGGTTGTTAGTTTATGACTTTGTTCCAAATAAGACTCTTGATTACCATCTCCATGGTAAGCTTTTTACAATCATCATATGATCTTTTTTGGTTAATCACTCTAGAAGAACGCTGTTAATTTTAGTAAAGTGGTAAGGTATTTAGATCGGATCCAAAGCTTTTGGGTTAGAAGCCCCAGGCATCAAATACAAGTTTCAGAAAACAGAATAAAATACCAATTATATTTGAGGAAAAAGAACATTCTCAGACTAAGCTGTATGTCTAAATTCGATATTTTGACTTATTTACTTACTAACCATGAGTATAATATATTCTCTCTGTTGTAAAAATCTTTCTAGACCTCTGTATAGGCTCTACTTAAATGTTAGATGAGGTTTACCGTCTAACGATTCACCTAAGCCCGTCTAAACAAGGTATACCACCTCATGCAATAATTTAAACATTTATTTAGACACTCTGTAGACATTTTTTAAGGTTAGTTCTACGTATAAGCATCAATGTGGCACTTTTAGGCATTTTTGCTTCTTTGGCTACTCCTAAGCACATACAAAATCATAGATTTTCAATTTATATCAATTGACATCAAACAAAACACTAAAATTTCATTCAAAATACATGAGTTCTCGAAAACTACCAGCTCCGATTACTCTTCGTCTAAACAATTAATCTCTAGTCCATACAAAAAGCCTAGCATCCGCCATGTGATTTTTACAACATCGTATGTTACATGCCCATATTTTTACCATTTACTACCATGGACTTGAATTGTTTAATAGAAATGAAGAACTAAATTACTAACATTCTTACTACAATTTTTAATGGCACTCTTGGTAGAGAAGTGAACACTTTATATTAGACAATACAAAAGTTAAATAGTCATGATAAAAATGTAAACAAGAGGCTCACTATATATTACTTCAACCATCATGGATTTATGGTAACTACTTCCACCATACTTCAAGTATTTGAATTTGAATTTAAAGTTGCTCCTCGTATGATATGTGTCATAATATGCACAAGCGTACACCATACAAAATAATGTTACACTTTATAAGGTAATTAACAGTCATATATAATGTATAACATTATGATGTTGCTCTTACACATACCTTCCAATTTCTGACAATTTTGAGTACCATATAATGTACTATTTCCTTGATAGTGATTATACTACAAATAAAGAAGTAAGTCACGACTTTCAACTGAATCGGGCTACACTGAGCTAAAAGTTTCGTGTATGAAACCGAAATGTTCATTTAGTTAAGTCGGAAGAAGCATTTTCATGTAGATTTAATGATAAAAATGTAGGAAAGGGGATCTCAACAATGGATTGGCCTACAAGGCTAAAGATTGCATTGGGGTCAGCAAAAGGCCTTGCCTACCTGCATGAAGATTGTGAGCTTCTATTCATTATTATAATTAGTTCACCTTTTTTCTTTGTGTATGTCTCTAAACGTTGGTGTTTGCATAAAGGTCACCCTCGGATCATACACCGAGATATAAAATCATCCAACATTCTTCTAGATTTCAACTATGAAGCAATGGTAATATTGCAGTGCTTTAAAACAAGCAAAATGGTAGTTTGGCGTTTCCTTTACATCATTAACCAAAACGTATTATTTTTGTTCTTCCAGGTTTCAGACTTTGGATTAGCCAAACTGTCTTCCGACAAAGACACACACGTCTCTACCCGTGTAATGGGAACTTTCGGGTGAACAATTTTCTCATTTCATTTTCCTTCTTGCTTGATATTTATTTACACACATTTATAAACAACTGTAATGAATGTAGGTACCTGGCTCCAGAATATGCATCAAGTGGTAAACTAACAGAAAAATCCGATGTATTCTCCTTTGGTGTGATGCTTTTAGAAATCATTACTGGAAAAAGACCCACTGATAGTTCTCATACGTTCATGGAAGATAGCTTGGTTGACTGGGTAAGGTTTTTACTTACATGTTGAGATTTCCAAATTCCTGTTCTTCACAGTTTTTTTTTCTTTCAAAAATTGGTAAATTTTATTTTGAAATTTATGGTATTACAAGTTTATCACAACCTTGTAGGAAATGACTTGCATATTAATCTAGCATCAGTGCCCTTCTACTGCTTGATACATATAACTTTATTCGTTAGTAATAATGCATTTTCAAGATACTTGACGGTTTATAAAAAGACATTTAGTGAAAAGCCACTTGTGAAAGATGCTTTGGATTTCATTCAAAAAAATACAATCACTGAAAGAAAGACACCTCATGAAAGTAAATTACATTAGCGGATGTTTCTATTTACGATAAATAATAAATGTATTGCTAAAAGCACCCGAGTTTGCTCTTTATAATACCATGATGTGGTACTAGGAAGTGCAAAGCATGATGTCTTTAGCTCCATACACCAGGCTTTGGACTTCCTCTTGCCAAAGCATGTTAGTAGAAAGTGTAAACTTCGGTGCTTTTAGCACTAGACAATAATGTAATTATTTCAATAAAAGATGTCTTAAGGTTGTAAAAATGTGTTTTTTCACTATGAAGTGTGATAATTCACTCAAGGGAGTTGTCGCCATTTGTAAATGTGTGGTAAATATTATTTCTTTACGTAGCAATCAATTCTCTCAACCATATTCAGTAAAAAAAAGTTAAAAACTTGTAACAGGCGAGGCCAGTTCTGTCACAAGCATTAACAGATGGAAACTACGACGAAATAGCAGATCCAAACCTGAACGGAAACTACAACCCGACAGAGATGGCCCGAATGGTGGCATGTGCGGGTGCATCAGTCCGACACTCAGCAAGAAGACGCCCCAAAATGAGCCAGATCGTACGTGCATTGGAGGGAGATGTCTCCTTAGAGGATTTGAACGAAGGAATAAGGCCAGGCCAAAGCATATTCTCCAGCTCAGGCTCAGAGTACGACTCTGACAACGTTTACAGCCACCATAACAACACACATATGAATAACAACAGGCCCAAGAAGGCGATGATCATGGATGGTCCTGATCGATTGTCTAGCGATGAGTTCAGTGATCCTACAATCGAATATGCTGGGCATGGTCTTGGTGCTCGTCGTAGCTCGAGCAGTGACTTTGCTTTCTCTGATGAGCTCAGTCCTGTTGGGAATCAAAGGTTTAGAGCTCCTCCTTCTCCTCCTCCACTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	OAY73810.1	1.1e-168	Proline-rich receptor-like protein kinase PERK4, partial
Swissprot	Q9ZNQ8.1	8.5e-147	Proline-rich extensin-like receptor kinase 4
trEMBL	A0A199VAJ5	7.7e-169	Proline-rich receptor-like protein kinase PERK4 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18470.1	61.23	8e-161	564	AtPERK4;PERK4	roline-rich extensin-like receptor kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g242641	AT2G18470.1	472	154	9	118	575	152	608	61.23	8e-161	564
g242641	AT3G24550.1	376	115	3	209	583	250	619	67.55	2e-154	543
g242641	AT4G34440.1	416	137	7	135	541	207	616	63.46	2e-150	530

Ortholog group

Species	Genes
Allium cepa	g242641.t1
Allium fistulosum	AfisC3G01614
Allium sativum	Asa0G02993.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	242	442	144.9	2.3e-42

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network