result

Gene information

Detail information of g242857

Location

Gene	Chr	Start	End	Strand
g242857	Scaffold_56472:HRSCAF_439558	165276	166016	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240884.1	6.0e-91	NAC domain-containing protein 68-like
Swissprot	Q52QH4.1	3.9e-79	OsNAC4
trEMBL	A0A199V250	4.7e-85	NAC domain-containing protein 68

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01720.1	72.78	4e-68	254	ANAC002;ATAF1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g242857	AT1G01720.1	169	40	3	2	168	3	167	72.78	4e-68	254
g242857	AT1G77450.1	188	58	4	4	189	8	191	65.96	1e-65	246
g242857	AT5G63790.1	195	57	4	3	185	47	237	62.56	2e-64	242

Ortholog group

Species	Genes
Allium cepa	g242857.t1
Allium fistulosum	AfisC7G04468
Allium sativum	Asa3G01454.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g12340.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	7	134	93.1	1.3e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0047484	P	regulation of response to osmotic stress
GO:0048518	P	positive regulation of biological process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:0097159	F	organic cyclic compound binding
GO:1901000	P	regulation of response to salt stress
GO:1901002	P	positive regulation of response to salt stress
GO:1901363	F	heterocyclic compound binding
GO:1902584	P	positive regulation of response to water deprivation
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000070	P	regulation of response to water deprivation
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network