result

Gene information

Detail information of g245095

Location

Gene	Chr	Start	End	Strand
g245095	Scaffold_56735:HRSCAF_439821	1006485	1007657	+

Sequences

CDS

>g245095.t1
ATGCCTAGTTCGAGGACAATGCGTGCGTGCGACAGCTGCGTGAGGCGCAGAGCTCGCTGGTACTGTGCAGCAGACGATGCCTTTCTGTGCCAGAACTGCGACTCCTCGGTCCACGGTGCTAATCCACTTTCACGTAGACATGACAGAGTCAGACTTCGTAACAGTTTATTAAAGGAGGAAGAAAAGGTTGACATAGGGCCCGCATGGCACCATGCATGCAAACGCAAGGCACGTACTCCTAGAAAGGGCATGAAGTTTAGGGCAGTTTCTTCTTCGGTGGTGCCTGAACTGGAGACCGAGTCTTGTGAAGAGGAGAGGCTGTCGTATTTGGTTCCAGTACTTGATGATGATAGTAGGAATTCTGAAGCTGTTGGTGGTGAATATTGCTTTGCTGGCTTCATGCCATCGGAGAAAGAGCTTGAGGAGTTTGCAGCTGATATGGAGAGTTTGCTTTGGAGAGGAGTTGGTAATAATGAAACATTTTCGATGGAAGAGTTGGGAATAGTAGATGATGAAAAGCGCTGTCGTGCTGAAACTGGCGAAGGTAAGGAAGAAAATGATAAAGGAAACAAAGAATATGATGATGAGACGGGTTATGAAGAAACAGACATGGATATGAATTTTGGATGTGAGCATGAACCTGAAACTAGCAGGGAGGTGGGAGAGGAAGAGATTAATAAAGAGAGGAGGAAGAAGATAGGGTTGAGGCTGGATTATGAAGCTGTGACTGTAGAATGGTGTGCTTGTAATAATGGGGAAGAGTCATCGCCGTGGATGGATGGGAAACGGCCGCGGTTTGGGCCGGATGATTTTTGGATTGATTGCATGGAAATGGGGGAAGAAGGAGGGGAGATGGAATTAGGGACAGCACGGAGCCAAATGGATATGTTTGGAAGAAATAGCCGGAGTTTTGATGAAGGGAGGAAAGCAAGAGTTAGCAGGTACAGGGAGAAGCGAAGAACGAGGCTGTTTTCAAAGAAAATAAGGTACGAAGTTAGAAAGCTGAATGCGGAGAAACGGCCGAGGATGAAGGGCCGATTCGTGAAGAGATCTTCTTTGTTACAAACTTCGTCTTAG

Protein

Gene

>g245095.t1
ATGCCTAGTTCGAGGACAATGCGTGCGTGCGACAGCTGCGTGAGGCGCAGAGCTCGCTGGTACTGTGCAGCAGACGATGCCTTTCTGTGCCAGAACTGCGACTCCTCGGTCCACGGTGCTAATCCACTTTCACGTAGACATGACAGAGTCAGACTTCGTAACAGTTTATTAAAGGAGGAAGAAAAGGTTGACATAGGGCCCGCATGGCACCATGCATGCAAACGCAAGGCACGTACTCCTAGAAAGGGCATGAAGTTTAGGGCAGTTTCTTCTTCGGTGGTGCCTGAACTGGAGACCGAGTCTTGTGAAGAGGAGAGGCTGTCGTATTTGGTTCCAGTACTTGATGATGATAGTAGGAATTCTGAAGCTGTTGGTGGTGAATATTGCTTTGCTGGCTTCATGCCATCGGAGAAAGAGCTTGAGGAGTTTGCAGCTGATATGGAGAGTTTGCTTTGGAGAGGAGTTGGTAATAATGAAACATTTTCGATGGAAGAGTTGGGAATAGTAGATGATGAAAAGCGCTGTCGTGCTGAAACTGGCGAAGGTAAGGAAGAAAATGATAAAGGAAACAAAGAATATGATGATGAGACGGGTTATGAAGAAACAGACATGGATATGAATTTTGGATGTGAGCATGAACCTGAAACTAGCAGGGAGGTGGGAGAGGAAGAGATTAATAAAGAGAGGAGGAAGAAGATAGGGTTGAGGCTGGATTATGAAGCTGTGACTGTAGAATGGTGTGCTTGTAATAATGGGGAAGAGTCATCGCCGTGGATGGATGGGAAACGGCCGCGGTTTGGGCCGGATGATTTTTGGATTGATTGCATGGTATATTTATATATTTTTCTATATTTTAAAATTCATATTAATACATGCACTTAGTACCTCGCTAGAGTAAATTATATAATGGGAATATATATGCAGGAAATGGGGGAAGAAGGAGGGGAGATGGAATTAGGGACAGCACGGAGCCAAATGGATATGTTTGGAAGAAATAGCCGGAGTTTTGATGAAGGGAGGAAAGCAAGAGTTAGCAGGTACAGGGAGAAGCGAAGAACGAGGCTGTTTTCAAAGAAAATAAGGTACGAAGTTAGAAAGCTGAATGCGGAGAAACGGCCGAGGATGAAGGGCCGATTCGTGAAGAGATCTTCTTTGTTACAAACTTCGTCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020270262.1	8.3e-73	LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 16-like
Swissprot	Q8RWD0.2	3.2e-61	Zinc finger protein CONSTANS-LIKE 16
trEMBL	A0A1R3HQ89	4.1e-66	Zinc finger, B-box

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25440.1	41.58	1e-64	243	BBX15	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g245095	AT1G25440.1	404	168	13	4	350	11	403	41.58	1e-64	243
g245095	AT1G68520.1	403	177	10	5	353	12	402	39.70	8e-61	231
g245095	AT1G73870.1	407	161	17	8	354	20	391	37.10	5e-48	188

Ortholog group

Species	Genes
Allium cepa	g245095.t1
Allium fistulosum	AfisC6G05114; AfisC6G05120
Allium sativum	Asa8G02123.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	7	50	29.7	4.8e-07
PF06203.11	CCT	Motif	308	350	63.1	1.7e-17

Gene Ontology

Accession	Ontology	Name
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network