result

Gene information

Detail information of g246133

Location

Gene	Chr	Start	End	Strand
g246133	Scaffold_56862:HRSCAF_439948	1113540	1119118	-

Sequences

CDS

Protein

Gene

>g246133.t1
ATGACCATGAAAAGAACGTTCGGTGTTTGGGAAAAAATAGTCAACACTGTACGAGATATGCTGACAAATAGTTTCGTAACAGGCATAGGTTGTCGCTGCAACTTATGCTATCCATAATTTTATTAGAAAAATACAATTGTACATATCTTGATTACAAAGAAATGGTTAGTAGAAGTTCAACCGAGTTATGCTAAAAATTGGCATAGACAACACTAACACATGCATGGTGGTACAAGTTTCACAAAAGATTGTACCAACATGTAATGTGATTAGAGAAGCTTTGGTTGCTACAAGATGATGTTGATCTATTTACTATTGTATTCCAATTGTTTTTTTTTCGTTTTCGTCGTAGACTTTGTACCACTGTAGTTGAATTGAGTAGTACGTTGTCGTTAGATTACTATTAATTAGTAATCATTAGTTATTACTTATTAATGGATAATTGTTAAAAATAAAATTACGTTACTTACATAAAATATACAACAATCCTTACTTCCAACCTAAAATCTAAAATACCTCCTGTCCAAGTATTGTCTAAAAATGTCACTAATACTAACTCTAGTCAACCTCTAACTCAAATCATTATCTAACTCTACTTTGTACGTGTTTGTAAAAGCATCCATATGCCAAATTGAATCCACATGAACCTTAATTTATATCCGGTTGAAACAACATTTTTGTTTATGTTTTACTTATTTTACACAAACAAAACTCTAACCAACCCTAAGAGCGTCTCCAACCGTTCAAGTGGTTGAATATTAAATTCTTGAAAATTCGGTCATTGAATTGAAGCAAGCCGCCGAATAATCGGATGCTTGTTAAATAAATATCCGATATTAAACGTTCGACTCGTCCGTGTTTTTCTCTTATTTTCCACTTCAAAATTTTCTTTTTTTAATTTAAAAAAGCGCTGGAATGCCACCGTGTTCGGGAAACCAATGACAATAAGAAAGATGAAGATTCTTGTGCGGATATAACTTGAAGAATTCGGTATTAGCTCTATCATGCTACATATATACTAATACCAAATCAGTAATGTAAAATATTAAAAATGCCAAAAAATTGTAACATACTAACAAAGTCCATGTCTCCTTCGATCCCACTTGGAACATATTGCTTGATTTTGTATATCAAACTCGTAGAAAGTTGTTTCTTTGCTTAGCTTTCTGAACCGTCTATTTAACGTAGAGAGCACGTGCGTGGTCGTTCCCACAACTTTGGAATAGTGAGCTCAACTGTACACAAGGTAAAATTCTTCAACGTTAAGTAACGCTACAGATGTGAAAATCAACAAATTAGGAATTGATAGGTGGATCTGTGGATATTCGTGTGTAGCTGCTTTAAAAATTGAAGAATTTATTACTTGAAATGAGTGTATAAAATAAGCATTAAAGTTAGAACGCTTACGTTCTTGTTTTGCCCTATAGTTTCTTTGAACCCTGAAATTCAATGCTGATTTCATATCCGTTGCTGATGGCCTAATAATTGAACTTTTTTCCAGGACATAGCCCGCTTAAGGCCCAGCCCATTTGGAGAAGTAATTCTAGAACCTTCTGCTCCGTTTCCAAATTTGGAAAACAGCACCAGTGAACAACTCCCACTTGGTACTACCACGCATCTCTCGATACTTCTTCCCTAAACCACCCCTACAAATTTTATCCAAAAATACCAGTTTCAATCCCCCAAAAAAATTCAAGTTCCAAATGGATCCGCAAAACTCTAACCCCGATCCGGTGAAATTAGAGATAATAGAGTCTTCGTCAGAGATTATGGCACCGAAACCGATGGAAGGACTGCACGACCAAGCGCCCCCTCCGTTTCTGACAAAGACGTACGACGTGGTTGATGACGCAAGTACGGACCAGATCGTGTCGTGGAGCCAGACGAACAATAGCTTCGTCGTTTGGGATCCGCATGCCTTTTCGATGATTCTGCTTCCTAAGTACTTTAAGCATAATAATTTCTCAAGTTTTGTCAGGCAGCTCAATACCTATGTGAGTATCTTACACTCTTGATTTATTGTTTTTTATTTTACGGAGCTAACCCTGGTGAGTTGAGTTGAATGCTATTTGTTAAAATAGCTTTCAAGTTGTATAAATGTTATTGTGATGATTGTGTGGGATTAGTTTGTTACAGGATACATATAGTTGGTATGATGGTAATATATAATAGGTGTTAGTCATATTTCAAATAAAAATGCTTGATGTTAATGATAAGTAGCCACATCTTGATACAATGGAGTAATGTAGATGGAATCCATCGGTAAGAAGTCATTTGATATTATTGGAGTTAGTACTTACTGAAGTCTGTCCAAATGGTTGTTGTACCGTTCATAAGTAAAGAAACTTTGTGACTGTAAGCATGCCATAAACCTCAATATTGTCCAATATCTAACTTTGGCTCAAGTACATGACTTAATTTATATGCTACACAAAAGTTGAAAGGTTGAGTGTTATACTATTTATCCCTATATACAGTGTACATGAATGCCACTCAATCACTCACTCATTGAACTTCTACATTTGGGATATAAATTTCAATTGTGCAGAAGACACATCCATTATGCTCAATGTCACATTTTGATTGATCAATGAATCTGTTTGTAATTTTCTTTTTCAAAAATAAAACGAAACTCATATGATAATTCCTTATCGTTTTGTTATTGCTGACAACTTCATGAGTGGGTAACTGGTTATAGAGGCTAAGGAACTTTAGGTGTTCAGTCAGCTTCTTACAAGTAGCTTATTACTAACAGCTCATCTACTTAGCTTGTAGAATCACGGTGAGATGCATAAAATATAGCAAGAGGAGACATGTTGAGAGGTGAAATGCAACCATAGATGTATTGAAATCTCCAAAGTTATATTGAGGAGTGGATAGTGACCATATGTCGAGAAATTGTGTACTGTCTTATAGACTATTGATAAGATTCATATGAGTAATAAAATCAATAAATAATGGGAACCAATGTAGACAGAGTTGTGCTGAATATTTTGTTTAACAACCACTAATGCTAGTGGTGGAATGGTACCATTTGCATCGTAATTCATGTGTACTATTTGCACATGTTGCATAATGGATTGTTTTAGTCAATTGCTTTTGACACTAGTTAGGGGACTCTTTGGTTCTATATAACATTTACAGTCAAACCCCATCTTAGATTGGAGCATTGAAACTGGAAATTTTCATTATTAAAATAATTAGCCATATCAATTTCTTGATTTTGGTCATAGTTTTAGTTGTATAAAATTGTTTGTTCAAATAGAGTTTCAATTCTACTTCCTTGACTTCTAGATTAAAAAAAAATACTAAATGTTTTCAACGTCGTAAATTTTTGTGAACTATTTTGTCAAACTATGAAACTGTTACCATTACGTTTATTGAGCAACGAAGATGATGTTGGTCATTAATTTGCGACCATCAAAATTCCAAACAGTTTCAAAATTTCTGCTAATTTTGGGTATTATTTTGATTTTAGATTTTGTTGCTTTTTCCTGTAGAAATACATTAGTAGACAGTGCACTTGCATTTAGGAAAGTAAAATATGCATGATACTTAAAGATGATTCAACTATTGATTTTTACTTCTAAAAAAAAAAGTTTTAGTGGGTTGGAATTGGCGTAAGTTTTGGATTTCTATTCCGAGATTAATTAATTGCTCTTTAGTGGTTTTTGTGTCATCTTGACTGATTTGTTACATTTTTGTTCTTTTACATATTTATTGTATTTACTTCACTTTTTACTATGTTATATTTACTGTCTAGTTTAAGCACTTGAAAGTTAAAATTGGATTTCAGATCAAATTGCTAGCTAATCATGATCGAAACCAGCACAGAACAGGCAAAATTTGCGATTCCCATCAGTATTTTATCTATGGTTTTAATAATATAAGTTAAGCCCTTAATGTTTGGATACCTTTTGGAATCATGTTTGTTTTTCCTTTCATCTACCTTGTGATAGAATTGACCGTGTATTTTTGTTTCATTTCTTATGTTTTGTGAGTGGTGTTTTTGTTTCATTTCTTATGCTGGAAGTATTGTCAGTTTGGTTTATTTCTTAAACATGTGGCAGGGTCAATTGCACCATAGTGTATTAGACATAGTTGTTCCAAATAAATTTATTTTTGTGTTGGTAACTGGTTGGTATCGAGTCTGTGTCACTTTCCATATAACAGGATTAAATAGAATTCAAACAAGGTGTTAATTTTATCTTTACCAATACAGAAGATAGTTGTTATTCTACTAGAAAATCGTAGAACTTGTATAAATCTGAATATGGAATTCTATTTAATCCTGTGAAATTCTTCTTAGAATTCAAACCTCGATAAGTCTAGTTCATCATCCCTTCAAAATTATTCCTAACATCAATGTTAGCTTGTAAACTGTTATAATGAATTTCTTTTCGCAGATTCATTAAATTCAAATCGCACATGAAGTACGGGAAACTTGTGTTACAAATATTTTTAACCAATCGATGTTAATTGATATTGTACTATACAAGTTGGAAATTTTATTTCGAAGGTTTTTTGGTTCGCATGGGGTCTTGCAAAAATGGATAATTTAATCAGAATGAGCAACCGGTAGAACCATTGAATATATCTGTAGAGTTTAATATGTTGAAAACAATCAGTATTATCAGCTGTATCAGGTGTAAAAACATCGTTGTATTGCATTTTTACTGTCCATCTTCTCCATAAAGTGTCTTTCTCAAGTATCACTTTCCATAATCATTTACATAACAAGGCTTTTGATTGAACTTCTTTAGATATTGCTAACTCAAATCATAGAAATTTTGTTTTGATTGAGTTTTTCTATCATCCAAGTGAACTTCAAAAGAAAACAAGTGAACCAAAAATGTAATTGATTTTGAATTTATTGTCAATAGTTGTCCATCAACATAAGCTGACTCGGTCTCGGTCATATGTATTTGGACACTGAGAACAAAATAATGAATCCTAATTTGTCTTCTAAATTTTGAACCAAATAAATAAATATTTAAAAATAGTTGAAAGCAAAGAATCTGTACTTCTTTTTCATTGTGCGTGTGGTTTGTTTGTCTTTCAATATGTTTTTTCATTTTTGCGATGCGCTATAAATGGATATGTTATTGTCCTGGCCTGTGCCTTCTGTGTTTCTTACAGCAGTGGGTTTTTTGTGACGTCCTGATAGAATTGATGGATAAACAGGGCTCCTACGGATGTTGATTTGTAAATTACTTCAGAGTCTAGGTGATTGATGTATGTAAGATGCTATTAGTTTACTTTACGGATGGTTACTGCATGACATAAAACAAATATATTACGGTTTATGATTTTTGTTGTGTTCTTTAAGCTCCTGTTCCTATTCCCAAAAAAAAAAAAAAAATATCATAATCAAAATCAAATGCTGAACTGTCATAGGCAGTGGGAAATAAATGCAATAATTGTTTGTTATTCTTACGCAGCTGCTGAGCAAAATTTTCAAGATTGAAGTTGAAGCAGATATCTTGATTTCCCAAGGAGAAAAAAGCATGCAGAAATTACAGCCACCTATAAATTTTTCTACTCAAATAAAAATAACTACAGAGTGCAACCACCTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	THU69978.1	2.7e-31	hypothetical protein C4D60_Mb08t20130
Swissprot	Q6VBB2.1	9.1e-32	Heat stress transcription factor 5
trEMBL	A0A4S8K597	2.0e-31	HSF_DOMAIN domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G22830.1	69.23	8e-32	133	AT-HSFA6B;HSFA6B	heat shock transcription factor A6B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g246133	AT3G22830.1	78	24	95	172	48	125	69.23	8e-32	133
g246133	AT2G26150.1	78	25	95	172	31	108	67.95	4e-29	124
g246133	AT3G51910.1	75	23	98	172	19	93	69.33	4e-28	121

Ortholog group

Species	Genes
Allium cepa	g246133.t1
Allium fistulosum
Allium sativum	Asa1G01216.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	109	174	78.0	5.8e-22

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009314	P	response to radiation
GO:0009408	P	response to heat
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009642	P	response to light intensity
GO:0009644	P	response to high light intensity
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032268	P	regulation of cellular protein metabolic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network