result

Gene information

Detail information of g246139

Location

Gene	Chr	Start	End	Strand
g246139	Scaffold_56863:HRSCAF_439949	99224	100702	+

Sequences

CDS

>g246139.t1
ATGGATCAACAGCAGCAGCAGCAGCAACCCCCCGAGCAGTACAAGTACTACTGCAAAGTATGCAAAAAGGGCTTCGGCTGCGGGCGCGCCCTGGGCGGCCACATGCGGGCCCACGGCATCAATGACGACTACACCTCCAACGCTTTGGACGCCGACGCCGATGATGACGCCAGCCACACATGGGGCGGCGAACCAGACTCCTCCCCTTCCCCCCACAAAAGAATGTACGCCCTCCGCACCAACCCTAACCGCCTCAAAACGTGCAGGGTCTGTGAAAACTGCGGCAAGGAGTTCCTCTCTTGGAAATCCTTCCTCGAGCACGGCAAATGCACCTCTGATGACGATGATGATCTCGGCCCTACCGATTCCTACTACCTGTCCTCCGATGATGACAACGCCTCCGCCTCCATCTCGGGCTGGTCCAAAGGGAAGCGGACCCGGACGTCATCCCGGCCCAAGTTCGGATCTAGCAACGAGGACGAGTACCTCGCTAACTGCCTCATGATGCTGTCCTCCGCACGGGTCGAGCCAGCCATCGATCTGCGCACCGAGGATGAGTACTACTCCTTGGACCATCATTCCATGAAGCTGAAGAACCCCATTTTCCAATATCATTTATACCAAGAGACGACGACGACAACAACTGCTACTATGAATCAAGTGCCGAAAGGGATGTTCGAGTGCAAGGCGTGCAAGAAAGTGTTCACCTCTCACCAAGCATTGGGAGGGCACAGGGCTAGCCATAAGAAGGTGAAAGGCTGCTTTGCGGCTAGGCTCGATGATGTCCAAGATGCTACTCCTTCTCAAGACCCGTTACCAACTTCAAATGACGATGATGATGTCAGTGTCCGGCCGGTGGTAGAAAGCACGACAGTGGAAATGGCGATAGTGCCGTTTACGAGTAATGCGGAAGCACTTGATGTTGCGCCTCTGAGTAAGAAGTTGAAAGTGCACGAATGCTCGATATGCCACAGACAGTTTGCATCGGGGCAGGCATTAGGGGGCCACAAGCGGTGTCACTGGATCACTAATGCGGGAGGGGAACATTCGATTTCGAGGGCGCAGAATATGATGAACGGTCAACAGCATTTATTGACGTTGAGTCCGCCTGTGTTGGATGCGTCGGATGCGTTGGATTTGAACAGACCGGCGTCTACGGAGGTAAGAAGCCCGTTGAGTCTGGAATTGGGATCGTCTTTGTATTTGCAGTATAATGTCAATGGGCATGGGCATGGGCATGGGCATAAGAGTAACGAAGTGTTGAGTAGGAACAAGGGTGAAGATGATATAGAAGGGTGTAGCAACAACAGGGACAATAATAATGTGGATGATGAAGTGGAGAGTAGAGCGAATAAGATAGTGAAGTTGAGCGAGCTTAAAGATGTGAGTGAAAGTGGAGGGGAAGTTTCGGGTCCTTGGTTGCAAGTAGGTATTGGTTCATCAGGAAACGTTGATGCAACTAGTGATCAGCTGCCTTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796146.3	1.6e-98	zinc finger protein ZAT4-like
Swissprot	O65499.1	1.1e-19	Protein DUO1-ACTIVATED ZINC FINGER 2
trEMBL	A0A8B7CC78	1.5e-98	zinc finger protein ZAT4-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02040.1	34.94	3e-26	116		C2H2-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g246139	AT1G02040.1	269	126	7	129	397	78	297	34.94	3e-26	116
g246139	AT4G35280.1	269	100	9	76	341	64	245	29.37	5e-23	105
g246139	AT5G04390.1	250	135	7	159	400	96	314	30.40	2e-17	87.8

Ortholog group

Species	Genes
Allium cepa	g246139.t1
Allium fistulosum	AfisC8G02572
Allium sativum	Asa1G02658.1
Arabidopsis thaliana	AT1G02040.1
Oryza sativa	LOC_Os02g44120.1; LOC_Os04g46670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	16	38	21.2	0.00019
PF13912.3	zf-C2H2_6	Domain	226	250	36.1	3.9e-09
PF13912.3	zf-C2H2_6	Domain	317	341	47.2	1.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007276	P	gamete generation
GO:0008150	P	biological_process
GO:0009555	P	pollen development
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019953	P	sexual reproduction
GO:0022412	P	cellular process involved in reproduction in multicellular organism
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032504	P	multicellular organism reproduction
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044703	P	multi-organism reproductive process
GO:0048229	P	gametophyte development
GO:0048232	P	male gamete generation
GO:0048235	P	pollen sperm cell differentiation
GO:0048609	P	multicellular organismal reproductive process
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0055046	P	microgametogenesis
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network