Detail information of g247806


Location
GeneChrStartEndStrand
g247806CHR2312186966312198619+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020108930.15.4e-231probable serine/threonine-protein kinase At1g54610
SwissprotQ9ZVM9.11.8e-207Probable serine/threonine-protein kinase At1g54610
trEMBLA0A6P5GTX73.9e-231probable serine/threonine-protein kinase At1g54610

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G54610.173.370.0 736Protein kinase superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag151789.t1; g247806.t1; g464010.t1
Allium fistulosumAfisC1G05049; AfisC2G02402; AfisC5G04001; AfisC8G05881
Allium sativumAsa0G03308.1; Asa0G05016.1; Asa1G00099.1; Asa4G03493.1; Asa5G01113.1; Asa5G02155.1
Arabidopsis thalianaAT1G33770.1; AT1G54610.1; AT1G54610.2; AT1G54610.3; AT1G71530.1; AT1G71530.2
Oryza sativaChrUn.fgenesh.mRNA.83; LOC_Os01g27020.1; LOC_Os01g27020.2; LOC_Os01g27020.3; LOC_Os01g27020.4; LOC_Os01g27020.5; LOC_Os03g22700.1; LOC_Os07g47180.1; LOC_Os07g47180.2; LOC_Os08g02050.1; LOC_Os11g13860.1; LOC_Os12g10190.1; LOC_Os12g42580.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain107391235.84.9e-70

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0051726Pregulation of cell cycle
GO:0016020Cmembrane
GO:0003824Fcatalytic activity
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0004693Fcyclin-dependent protein serine/threonine kinase activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019538Pprotein metabolic process
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0071944Ccell periphery
GO:0097472Fcyclin-dependent protein kinase activity
GO:1901564Porganonitrogen compound metabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08819CDK12_13; cyclin-dependent kinase 12/13EC:2.7.11.22 2.7.11.23 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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