result

Gene information

Detail information of g24921

Location

Gene	Chr	Start	End	Strand
g24921	Scaffold_15546:HRSCAF_163948	217573	219863	-

Sequences

CDS

Protein

Gene

>g24921.t1
ATGTTAGAAATTCGAAATATGAAGTGTCCAACTATTATTTATAGACCTACCTGCCCATCTGATCTTGATGCGCTTGAGAAAGTACATGCTGCCTTATTCCCAATAAGGTGAGACTTAGAATTCTGGGGATTTTTCCTCGTATCTTCTGTTAATATGGTTTCACTTAGTTATGGGTCTTCACATACTAAATTTAGGTACGAGAGAGACTTTTTCCTCAATGTTGTCAATAACCGTGGTATAATCTCTTGGGCAGCTGTTGCTGTTAATAGATCTAATGATCAAAACGATGAACTTGTTGGGTTTGTTACTACACGTACAATTGCTGTAAAGGATAGTGAGGTGCTTGAATACTTATATGTGATTGTTTGATATCTCAAACTGAACTGCACTCATTTGGCAAGTCAATTAATTAACATGCAGATTGACGATTTGATAAGGTTTGATGTTACAATGAAAGAACCAAGTCTGGTATATATATTAACACTTGGTGTGGTTGAACATTATAGAAATCTTGGAATAGGTTTGTATATTCTTACTGGTTTTTCAGGTTCATTTGTTCTATTATATTATCCAAATATTCAGTTTTGTAGTTTTTTTGTGTGTAAATGGCAGCTTCTTCACTTGTTCAAGAGGTTATAAAATATGCTTCTGGCATCACAAATTGCAGAGGTGTCTATTTGCATGTTATTGATTACAACCATCCGGCCATTCATTTCTACAAGAAAATGCATTTTAAACTTGTTAGAAGATTACCAAAGTTTTACTATATAAATGGACAGCATTACGATGCATATTTATTTATGTACTATGTGAATGGCGGTCAAACTCCATGCTCTCCTCTGTAAGTTATTTTTCTCCTCTTAATGGTTTTTTTCAGACAGTTTGTATATCCTCTTCATTTGCTTTGATTTGATAATTTTTTTATATCTTATATGTATAGTTCACTTACATAGTAGTCATGTCTATATATACATATATAAAAAGAATGTTCCAAACCTTAGTTGACTTGCTAAAAGAACATAGAAGATCTAGGGCCTAGAGACTTTAGATAAAATCTGTCTCCTTACACCAAATTTTCTTCAGAAAATAACATCCAACTCAAGGAACAATAAGGAAGCAAGCAATGCATAAGTTCTTAAGTGTGGAAAAGGGAAAAAAAGGAAATTTGAAGTGCATATGATGAAGTCCGTCATTATCACTTTTGACTCAAACCCATAAGATACAGATAAAATAACATAGTTTAATGCAAATACTTTATGGATGTGCATACTTATTAAATTCTGTACGGTTTATAAGTAAGATATTTTAATCTTTAAGATTCTTTGTGATTATGAACTTGGAATGACAACGTTCTACTTCATCTAGCCCATTTCATCAAACTACTTGGGAGCTCTTGTGCGTTCCTATCATTTTTTATTGAACTAATTGCGATATATTAAATATTCCGAAGAAGAAACTCATGGTAGCAAATATCGTTTGTTCTCGAATGATGCTGCTAACTAGCTTAAAGAATAGCATCAACTAAGTATTTGATTCTCCACTGTCATAATTATATGCATAATTTCAGGCATACTGCAGAAAAATTTCTATTGTTACTCTGTATTGGAGTGGCATTCATATAGCCATACATACAGACTCCAACTTTGGCCAGTTAAAGTAGAAGTAAACTCTAATGTGACACGTTTTAAGCCTACAAGTTTACTGGCTCCTGTCTTAAAGAATTTGCCTTGATGGTGTAAACTTTTTGACCTCTTAGACGACTTTCGATGTTCTGATATTTACGTGAATATATATATTTTCTACGCATCTTTTGTCCAGGTGAATAAATGTCAGTAACTTAAATTCAATTTTTCATTAGTTAATCATAAAGATAACACATCATTTGTCTTTACATATCACTGCTTGTATCAAGAATGATCAAATTGGAAGAAGAAGAAAAAAAATGCAATTCTATGAAGTAATAAACCTCGGTGTAATAAATTGATTTGGTTTTCAACATTATGCCACAAAGATATCAGCAAACAGCTATACAATAAAAATGCATATAATGTATTTACCTCTAATGTGCATAGTAGTTCAAAATCCTTGTGCCATTGTTTTTGTGCAGACAAATTGTGGCGACAATTGCATCGTATTTTAAAGGCATATTCAGAACAGTGTCATCCAAGCTGTGGAGGAATGAGCAGAAGAAGATAGCAAGATGGTCGAAATGTAAAGAAAGCAACAGCCTTTTAGTAACGCATAACTCAAGGATCCTCAGTTCAGACTCTAATTTATGTCAAGAAGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260802.1	7.1e-103	histone acetyltransferase MCC1-like isoform X2
Swissprot	Q9M8T9.1	1.6e-67	Protein MEIOTIC CONTROL OF CROSSOVERS 1
trEMBL	A0A5P1F5I6	5.1e-103	histone acetyltransferase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16800.2	51.61	2e-72	268		Acyl-CoA N-acyltransferases (NAT) superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g24921	AT5G16800.2	248	119	1	1	247	14	261	51.61	2e-72	268
g24921	AT3G02980.1	225	102	1	9	233	22	245	54.22	6e-71	264
g24921	AT5G16800.3	251	122	2	1	247	14	264	49.80	4e-66	248

Ortholog group

Species	Genes
Allium cepa	g24921.t1
Allium fistulosum	AfisC5G05317
Allium sativum	Asa6G05356.1
Arabidopsis thaliana	AT3G02980.1; AT5G16800.1; AT5G16800.2; AT5G16800.3
Oryza sativa	LOC_Os02g46700.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00583.22	Acetyltransf_1	Family	65	159	57.8	8.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0007059	P	chromosome segregation
GO:0051276	P	chromosome organization
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0006333	P	chromatin assembly or disassembly
GO:0006334	P	nucleosome assembly
GO:0034728	P	nucleosome organization
GO:0003824	F	catalytic activity
GO:0004402	F	histone acetyltransferase activity
GO:0004596	F	peptide alpha-N-acetyltransferase activity
GO:0031497	P	chromatin assembly
GO:0006323	P	DNA packaging
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006473	P	protein acetylation
GO:0006474	P	N-terminal protein amino acid acetylation
GO:0006475	P	internal protein amino acid acetylation
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0007049	P	cell cycle
GO:0008080	F	N-acetyltransferase activity
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0016407	F	acetyltransferase activity
GO:0016410	F	N-acyltransferase activity
GO:0016569	P	covalent chromatin modification
GO:0016573	P	histone acetylation
GO:0016740	F	transferase activity
GO:0016746	F	transferase activity, transferring acyl groups
GO:0016747	F	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0017196	P	N-terminal peptidyl-methionine acetylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018205	P	peptidyl-lysine modification
GO:0018206	P	peptidyl-methionine modification
GO:0018393	P	internal peptidyl-lysine acetylation
GO:0018394	P	peptidyl-lysine acetylation
GO:0019538	P	protein metabolic process
GO:0022414	P	reproductive process
GO:0031365	P	N-terminal protein amino acid modification
GO:0034212	F	peptide N-acetyltransferase activity
GO:0034622	P	cellular macromolecular complex assembly
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0043543	P	protein acylation
GO:0043933	P	macromolecular complex subunit organization
GO:0043966	P	histone H3 acetylation
GO:0044085	P	cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0051321	P	meiotic cell cycle
GO:0051604	P	protein maturation
GO:0061733	F	peptide-lysine-N-acetyltransferase activity
GO:0065003	P	macromolecular complex assembly
GO:0065004	P	protein-DNA complex assembly
GO:0071103	P	DNA conformation change
GO:0071704	P	organic substance metabolic process
GO:0071824	P	protein-DNA complex subunit organization
GO:0071840	P	cellular component organization or biogenesis
GO:1901564	P	organonitrogen compound metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21121	NAA60; N-alpha-acetyltransferase 60	EC:2.3.1.259	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network