result

Gene information

Detail information of g250497

Location

Gene	Chr	Start	End	Strand
g250497	CHR2	25889636	25890687	+

Sequences

CDS

Protein

Gene

>g250497.t1
ATGGGTCATCACTGCTGTAGTAAACAGAAAGTTAAACGTGGGCTGTGGTCACCCGAGGAAGATGAGAAGCTGATGAATTACATTACTACCCATGGCCATGGCTGCTGGAGCTCTGTCCCTAAACTTGCAGGTACTCACAATCTCCCCCTTCAAAATTTTCTTCAATCAATTTCTCGGCTTATACAAATTTAATAGCAGGGCTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATCAACTACCTAAGACCAGACCTCAAAAGAGGAACGTTTTCTGCCAATGAAGAAAGAATCATAATAGATGTTCACAGAATTCTTGGCAACAGGTATTTATTTCATCTTTTCTTGAACATGAGTCAGACTTATGATAAGACTCTTGTCACTGTGATATATTGTATGATTGATTATATATTCAGGTGGGCGCAAATAGCAAAACATTTGCCAGGAAGAACAGACAACGAGGTGAAAAACTTCTGGAACTCATGCATAAAGAAGAAGCTGATAGCTCAAGGCCTGGATCCCAAAACACATAACTTGATGCCTGCTGCTTCAAGGGCGGCAGCAGCAGGGAACACTTACAGTGTTAATGGAAGTGCGAAATTATCGACTCAGTTCCAACAACCACAGAATTCTAATGTGGTTCCTTTTACTATTAGCCCCCCATTTGGCACCTTGCCCACTTTGAACAATAGCAATGATAACGGTGCACAGGTTTTGATTGAGTATCAAGAAAACGATGTCATGATGAGCTTCAAGGAGCAGGATCAATGCGGTTTGATGGATTACTCGGAGTTTGGAATGGGCGATGCTTGCAATATGTGGGGTGGGAATAGCAATAACAATGATGATGGTGGTGTTGTTAATGGCGTTGACAACTTGGATGTGTTGAGGCAAAATGCACAAGAATTGGAAGCTGTACATAATGAGATGAATGAAGATATGTATAGCGCGGCGTTTGATCTTGACATGATGGAGTCTACATTGAATATGTCTTGTGGGATTTTCAGCAATATTGGGACATCAATGGAGCAATTGCAATGGGATTGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256664.1	3.6e-90	myb-related protein 330-like
Swissprot	Q8LPH6.1	1.9e-59	Myb-related protein 86
trEMBL	A0A8B7CGF3	1.2e-82	transcription factor MYB26-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12720.1	84.96	7e-69	257	ATMYB67;ATY53;MYB67;MYB67	myb domain protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g250497	AT3G12720.1	133	20	0	1	133	12	144	84.96	7e-69	257
g250497	AT1G57560.1	153	50	1	3	155	4	153	65.36	6e-60	227
g250497	AT5G26660.1	126	26	1	1	125	1	126	78.57	7e-60	227

Ortholog group

Species	Genes
Allium cepa	g250497.t1
Allium fistulosum	AfisC2G09135
Allium sativum	Asa6G00585.1
Arabidopsis thaliana	AT3G12720.1
Oryza sativa	LOC_Os07g31470.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	57.2	1.2e-15
PF00249.28	Myb_DNA-binding	Domain	66	109	51.7	6.3e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network