result

Gene information

Detail information of g252488

Location

Gene	Chr	Start	End	Strand
g252488	Scaffold_57676:HRSCAF_440762	224725	228679	+

Sequences

CDS

>g252488.t1
ATGGGGGTGGTTTTGAAGGCTGCGGTGGTTTCGGTCGCTGATTTGGGGAGATGGTGGAATCGCATTGATGGTCGATTTGGGTGTTTTCGCCGCTTGGTTCGCGATGGAGTTTCTGGTTTTGGTATTGGTGGTTTATGGAAAATGAGGCATTGTGGGGAGACTAATTTTTATCTATGTGAGATTAATCGGGATATGGTTATTGATGCCACATACAAAGGAAATAAATCTAGATTCATAAACCATAGTTGTCAGCCTAATACTGAGATGCAGAAATGGACTACTGATGGAGAGACTCGAATTGGTATATTTGCTTCTGGAGATATCAAAATAGGAGAGGAGCTTACTTATGATTATCAGTATGTCTCTATCTTTGAGAGAGCAGATCGAGACCGCAGTGGCAGGATCGACACTTCAGAGCTTAGAGATGCTCTAATGAGCCCGGGATTTGCTGTATCTCCTGTTGTTCTCGACTTGCTTGTTTCCAAGTTCGACAAATCTGGAGGCAAGACCAGGGCCATTGAATACGACAACTTTATTGAGTGTTGCTTAACTGTTAAGGGTTTAACCGAGAAGTTTAAGGAGAAGGATGTTGCATTTTCAGGGTCTGCAACCTTCACTTACGATGGAATGATCAGCAGAGGTAGGGAATGTACGTTTTGGGTCAAGCAGTTTGATGGGTGGAGTTCGATGAGGAGGAGACTGTTTGCAGTTTGGATGGGAAATGTTGATGTGTGTTTTGGAGCAGTAGTAGTGGATGATGTTTGGGTAATCAAGTGTGGTATAACAATTGAAATGGTGGGGAGGCTGTTGATGAACTTGAAATGGGGGTATTTGATGTTTGTAGAAGGAAGTTTGGTTGCAGTGGTGGTAGTAATGTTGGTTTTAGGAAGTGATTGTACAGAGACTTGTTGCCTCGGCTATGCTGTCGGGGTTGTTGGACTGATCATTATCAATAGCCGCATCCTCCCCATCTTAAGACCGAGCTGCAGCTTGATAGCAATATGGCCGAAGTGGTTTGGAAGACAATGCAATGGCAGTTCGTTGTATGAAATGTGGGTTGAGGTGGAGATCAGTGAAGGAGTTTTGACAGTAGTGGGTGGTCAGTTTTTGATGGTGGTCAGGGATATGGAATTCAACGATCCTAGGGATGCAGATGATGCAAGGTACAGCTTGGATGGTAGAGAATTTGATGGAAGTTTTCTTATCGTGGAATTTGCAAACTTGGTGGTATAA

Protein

Gene

>g252488.t1
ATGGGGGTGGTTTTGAAGGCTGCGGTGGTTTCGGTCGCTGATTTGGGGAGATGGTGGAATCGCATTGATGGTCGATTTGGGTGTTTTCGCCGCTTGGTTCGCGATGGAGTTTCTGGTTTTGGTATTGGTGGTTCACGGTGATGAGATTGCAGTGGTTTTGAAAGTGATGAGACGTCAGTTGTATGATGAACTATCAGCAGGTTAGAAAAAAGTAACAGAAGCTCCTATCAGTAGGTTAGAGTTTCTATTGAAATTTCATTATGCAAATATGTTAATGGCTAGCATTATGCAACAAAACTTTGATTTCGATTTCTATAACTATCTGTATTAATTTGTCACAATATAGACGGAGAAGTGTGGAGCTGGAATATTAGCAGAAGAAGATATTAAGCAAGGAGATTTTATTGTGGAATATGTGGGTGAAGGTGAGTAAGTGTTTTTAGCTCAGATTTTTTTGTATGAAATTATAAATCACAATAGCTGACTTTATATTTTTTAACAGTTATTGATGACAAAACATGTGAAGATAGGTTTATGGAAAATGAGGCATTGTGGGGAGACTAATTTTTATCTATGTGAGATTAATCGGGATATGGTTATTGATGCCACATACAAAGGAAATAAATCTAGATTCATAAACCATAGTTGTCAGCCTAATACTGAGATGCAGAAATGGTTTGTTTTATTGTAACTTTGTTGATTTTTCAATCTCGGTGGTAACTCGTCTTATAATATTTTTTTAGGACTACTGATGGAGAGACTCGAATTGGTATATTTGCTTCTGGAGATATCAAAATAGGAGAGGAGCTTACTTATGATTATCAGTATGTCGTTTTCTTTTCTTGTGTGGAACTTATAGGCTAAATTGCTGATAATGCTTCTCTAATCAAGTAACTTATAGGCTAAACTGAAAGTAAAACTTTACCGGAGTTTGTTCTTTTTGACTATCACGTTATGCTTACATGATCGCATCTTATTACTAGTTTATAAATATTTATGTCTACTTCTTTGACCTGATCTCCTAAACTTCTCTATTATATTATATTTAACTATACAGTTTTTAGTCAATTTTTGTTTTCAATTTCTTGAGCTGTGTGATCCACGTATGCATTATATCTAATGCAAATGTAATTCCCACTCCAAAAAATAGCCTCGCAGTGCACTTTCCTTAATATGAAATACACAAGTGAAATGGGGATAGTTCTCTTTGGAGTGAGAATGACGTATTCCTCTAATTATTCTTTGCCTCCACACCACCACAAAGATGCATTACTCAATTACCATTTCTTGTGTGCAATTACTGATACTTGTTAAATGTAAACTTTGCAGGATCGAATGAATTCACCTCTGTGTTTTACAGTCTTCAGAACTAGCGGGTATGCTAATTGTTATCATGGTCTATTATTTTGGTGGGAAATAGAAATGCTTGTTTTGCATATTTTTATTTACATTACCTCTGTAGAATACTGAATTGTACTTGTGATAACCTTCCCCACGCTAGAAGTAATATATGTTTTGCCTAATCACAAAATTTTGGCCATATGAGAAACATCTTATGTCTTATATAGGAGATGATTGATATATAAAACATTCATATTACAAGTATGTGGAAGAAATTTTGGATTAATATATCATTTGAAATGGAGTATATTACCATTTTCATATGGTTTGTGTACAAGAAAATGACAGTATTGTTTAATATTGCAGTCTATCTTTGAGAGAGCAGATCGAGACCGCAGTGGCAGGATCGACACTTCAGAGCTTAGAGATGCTCTAATGAGCCCGGGATTTGCTGTATCTCCTGTTGTTCTCGACTTGCTTGTTTCCAAGTTCGACAAATCTGGAGGCAAGACCAGGGCCATTGAATACGACAACTTTATTGAGTATGATTTATTCCTTTTTTCCCTCCATTTCGTTTCCTTTTTTCTACTTTATTAATTTCACAATTTTCTAATAATTTTTCTTTTATTTTTTGAATTATGTTGCAGGTGTTGCTTAACTGTTAAGGTAAATTACATCTGCATTTTTTATTTCGCGCGTGCGTGTAAACTGAGTAAGCTTAAGTACTGTTGCATTGTTTTGCAGGGTTTAACCGAGAAGTTTAAGGAGAAGGATGTTGCATTTTCAGGGTCTGCAACCTTCACTTACGAGTCTTTTATGCTAATTGTTCTCCCTTTCCTCATTGCCTAATAATATAACACTTCTGGATATAGCTAACAATTGTGGCAGTTGTTCAGTGGAATGATCAGCAGAGGTAGGGAATGTACGTTTTGGGTCAAGCAGTTTGATGGGTGGAGTTCGATGAGGAGGTGGGGTGAATGACAGGGATGGCTGCAGTTGATATGTATTACAGTTTAGATGAAAGTTAAAAAATGGTGAGATGTTTTGTTGATAAGCAGTGATTCGGGAGGAGACTGTTTGCAGTTTGGATGGGAAATGTTGATGTGTGTTTTGGAGCAGTAGTAGTGGATGATGTTTGGGTAAGTATGTTGTATTAGGGTGGAGCAGGAGTTGGAATATGGGAGATGAAGAGGACAGAGGGTTGTGATGATGGTTTTCTTGGTTGCAGTCAAGTGTGGTATAACAATTGAAATGGTGGGGAGGCTGTTGATGAACTTGAAATGGGGGTATTTGATGTTTGTAGAAGGAAGTTTGGTTGCAGTGGTGGTAGTAATGTTGGTTTTAGGAAGTGATTGTACAGAGACTTGTTGCCTCGGCTATGCTGTCGGTAAATGATGAATGTGAAGGGTAGTGGGATGCAACAGTATGCAATGACGATGGTGACAGCATTATGATTGAGGAAGTGAGCAGGGGTTGTTGGACTGATCATTATCAATAGCCGCATCCTCCCCATCTTAAGACCGAGGTAAATGCCAAGAAAGATCAAAGTAAATGCAAAAATAATAAACGATAATAAGATTTATAGTTTTATATATTTGTAAAACTATATAAAACTATAAATATAATTTATAGTTTTATATATTTGGTGATCGAGCAGTGTGATGTTTTGAGCTCTGCGGTGTGATGTGGAGGAGTGGGATGGTGAACTGAAGGAGAGGGCAAATGTGCGTTGTTTAAGGTGAAGCTGCAGCTTGATAGCAATATGGCCGAAGTGGTTTGGAAGACAATGCAATGGCAGTTCGTTGTATGAAATGTGGGTGTACAGGAATGTGAATTGTTAGGTTGACTGGAAGATAGCCGTGTACACTGTGGTGACTGTGTCTACTGTTGCAGAGGTAGGATGACAGGTTGAGGTGGAGATCAGTGAAGGAGTTTTGACAGTAGTGGGTGGTCAGTTTTTGATGGTGGTCAGGGATATGGTCAGCGGTATATTATGTAAATGGTGCACAACAATATATTGACTGATATGATCAGTTATGTAGATGAGTGTTTCAGTTATGTATATTGACTGTGATGAAGGATGTGATGAAGGACTTTGACTGTGATGAAGGATGTGCACAGGAGTACTATGATGAGTATTCACCTTAGTGCTTTATTTTTTTTGTTTTATTGTTTTGGCCTGCTGCACTTTCTTTATTTTCAAAGCTTTCAACATCCATATTGTTGTTGTTTTGTTGAACTGAAGTTTGGAAATTTTCCATGACTTCATGCTATTGTGTTATATTACTATGATATGTTGCATTGTCGTGCAAGTTCTTTGCTTACTGGCCTATTTTTGTTCCACCAAATTTTGTGTTGAGAGTACGAGACGTGGATATGAAGCGCGACTATGCATTTGTTGTATATATTTCTTACACCTATTCTCCTTGTCATATCCAAGTATCTGACATACTAACCATTTTCGGTTTGCCATAACATTTGTTCTATGTCTTGTTTTATTGTATTACAGGAATTCAACGATCCTAGGGATGCAGATGATGCAAGGTACAGCTTGGATGGTAGAGAATTTGATGGAAGTTTTCTTATCGTGGAATTTGCAAACTTGGTGGTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018678127.1	2.0e-38	PREDICTED: histone-lysine N-methyltransferase ASHH3-like isoform X3
Swissprot	Q9FYE4.1	7.3e-38	Calmodulin-like protein 50
trEMBL	A0A804I2M2	3.0e-36	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G04170.1	83.33	2e-39	160		Calcium-binding EF-hand family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g252488	AT5G04170.1	90	15	0	122	211	256	345	83.33	2e-39	160
g252488	AT3G10300.3	90	16	0	122	211	237	326	82.22	1e-38	157
g252488	AT2G44150.1	86	19	1	45	130	159	242	75.58	5e-33	139

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00856.25	SET	Family	63	118	54.3	1.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0005783	C	endoplasmic reticulum
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005911	C	cell-cell junction
GO:0006464	P	cellular protein modification process
GO:0006479	P	protein methylation
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0008168	F	methyltransferase activity
GO:0008170	F	N-methyltransferase activity
GO:0008213	P	protein alkylation
GO:0008276	F	protein methyltransferase activity
GO:0008757	F	S-adenosylmethionine-dependent methyltransferase activity
GO:0009506	C	plasmodesma
GO:0009987	P	cellular process
GO:0012505	C	endomembrane system
GO:0016278	F	lysine N-methyltransferase activity
GO:0016279	F	protein-lysine N-methyltransferase activity
GO:0016740	F	transferase activity
GO:0016741	F	transferase activity, transferring one-carbon groups
GO:0018022	P	peptidyl-lysine methylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018205	P	peptidyl-lysine modification
GO:0019538	P	protein metabolic process
GO:0030054	C	cell junction
GO:0032259	P	methylation
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0055044	C	symplast
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11423	SETD2; [histone H3]-dimethyl-L-lysine36 N-methyltransferase	EC:2.1.1.358	Lysine degradation	ko00310

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network