result

Gene information

Detail information of g253134


Location
GeneChrStartEndStrand
g253134Scaffold_57777:HRSCAF_440863195980196800+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008794566.18.3e-49transcription factor LAF1-like
SwissprotQ9M0K4.21.4e-40Protein LONG AFTER FAR-RED LIGHT 1
trEMBLA0A8B7C9S76.0e-49transcription factor LAF1-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G52260.160.992e-41 165AtMYB19;MYB19myb domain protein 19

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Ortholog group
SpeciesGenes
Allium cepag252333.t1; g253134.t1; g419348.t1; g97562.t1
Allium fistulosumAfisC8G03401; AfisC8G03402; AfisC8G03420; AfisC8G03425
Allium sativumAsa1G01862.1; Asa1G01864.1; Asa6G03023.1; Asa6G03024.1
Arabidopsis thalianaAT4G25560.1; AT5G52260.1
Oryza sativaLOC_Os02g42850.2; LOC_Os04g45020.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain55251.01.1e-13
PF00249.28Myb_DNA-bindingDomain5910352.14.9e-14

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001134Ftranscription factor activity, transcription factor recruiting
GO:0001135Ftranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0007154Pcell communication
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0042493Presponse to drug
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009639Presponse to red or far red light
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009751Presponse to salicylic acid
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010017Pred or far-red light signaling pathway
GO:0010018Pfar-red light signaling pathway
GO:0010033Presponse to organic substance
GO:0010218Presponse to far red light
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0014070Presponse to organic cyclic compound
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023052Psignaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032502Pdevelopmental process
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071214Pcellular response to abiotic stimulus
GO:0071478Pcellular response to radiation
GO:0071482Pcellular response to light stimulus
GO:0071489Pcellular response to red or far red light
GO:0071490Pcellular response to far red light
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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