result

Gene information

Detail information of g253628

Location

Gene	Chr	Start	End	Strand
g253628	Scaffold_57843:HRSCAF_440929	70719	73038	-

Sequences

CDS

Protein

Gene

>g253628.t1
ATGCAAGGAAAAGCCGAGTTCTACCAAGAGGTACTAATTATATTATATGAATTTGAAATAATTTTTTTTTTAGAGATGTCTGTTGCGATATTTACAAAGGAAGCTGTAATTCACATTGCAAAATAGAATTACCATAACTAAAGTACTGGAGTATTATTAGGAACCACTTACTATCGCAAAATAAGTTGCCAATATAAAGAGTAATATATTATCTTGGACCGATATTTTATACTTGGTGAATGGAACACTTGCGACGGTTAAGGTTTGACTACCCATTATATATATATATATATATATATATATATATTATATATATATATATTATATATAATATATAGTAGAAACATCCACGGCACATGTAGAGATTTTTAGTCGCCTAGGCAGAACTTAGACAGTTTTTCTTCTTCATATACTTCATAATACAAATAAATATATTTTTAATATCCATAAATCTTATATTAATACTCTAATTCAAGCATAACAAAATGTTACAACTCGTTGAGTGGTTAAAAACAAACCTATTTAGGTCTTCAACAAACCAACCAATAGGCAAAAAGTGAATTTAAACTATGTTCTATAGACAAACAAGAAATACCAAACAACCAAATGACACAAAATTTAATGAACAACCAAAACAAACATATCATTATGAATAAACAGGTACAAATTGACAATGTAAAAAGCGATGCAATCATATTGACCCTAAATTATGTATTGTCAGCATAAACAAATAAAGTCTATATGTAACCTAATAGTCCGTTTTATGTTTTAAAATAAAAGGGAAGACCAAGAAAAAGAGTTTAGCACTGTTTTCATGCTTGTTAAGCCTAATCCATTCTTTTGTGCTTAAATAATCTGGGAACTGTATATCATCATGGGAAAATGTTAGCCTTACTGATAATATTGTAAGTAAGATTTACTTACAAGAGAGGAACTGGTTTGTGGGACTCACGACACATGTGTGGTCCCTATGATCATTTCTCTTTTGTAAGTAAGATGTACTTGCGGATTTGTAAGTAAGGGTAGCATTATTCTTTGAAATGGACTTTGAATGTTTATTAGTCCGATAGAATCTTTTATTGCTAGTTTAGACAAAATTATACAAAACAAAATTTGAATTAGCGGCCTCAATGAACCTTACTTATATCCGTTCTTGAAATCATGTGCTGTAAAAACAAAAAACAAATTGGTAATATAAAAAGCGATGTCATAACAGTATTCTAATAACGTTGAACTATTCTCAACAAATGCGACCTGGAATTCGAATAACGGACGTCTTTTATTCTATTATGAATAAATAGGTACAAATTCTAAGCAAGGTGAGGCACCAACATGTAGTGACACTAATAGGCACATGTCCGGAAGCATGGGCCCTCATATACGAATACCTACCAAACGGGAGCCTAGAAGACCGACTAGAATGCAAAGGCAACACGCCTCCACTCCCATGGCACATACGTACAAGGATCATCTCCGAAATATGCTCATCCCTCATCTTCCTCCACTCCTACAAACCTCACACTATAGTACAAGGCGACCTCAAACCTGCAAACGTCCTTCTTGGTTTGAACTTCGAAAGCAAGCTAGGTGACTTTGGAATAAGCCGCCTTTTGGAGGAATCCAATACCACAGAAACACTTTATAAAAGGACCAATCCTAAGGGCACGTTCGGTTATATGGACCCAGAGTTCTTGGCTACTGGGGAGCTTAGGCCTCATTGCGATATATACTCATTTGGGCTGATAATACTAAGATGTTTAACGGGTAAACCGGTTTTAAGGATAATAAAGGAAGTAAAGGAGGCAATGGATGAAGATAAGTTGGAAGAGATATTAGATATTACAGCAGGAGACTGGCCTTATGTGCTAGCTAAACAATTGGCAAACCTGGGTTTGAGATGCTGTGATATCGATAGGTTGAAGAGACCTGATCTTGAAAAGGATGCTTGGGGAGTTCTTCAGCCAATGGTGCGATTTCCAGCTCCCTCTTACTTTATATGTCCGATATTCCAGGTAAAATAGCATACTAATTTTATGTCAATGCATTCATAAAAGCTTCTTTCCCTTGGGTTTGATTATAGTTGAACTACAAAGTGATGAATGCATGCATGCATGTTTTACTGTAAAAGCAGGAGATCATGAGAGATCCACATATAGCAGCGGATGGATACACATATGAGGCAGAGGCCATCAGAGGATGGATCGAAAGTGGGTACGGTAAATCTCCAATGACAAACCTCAAATTATCACATCATAATCTTGTGCCTAACCGAGCTGTAAGGTCTGCAATTGAAGAATGGTTCCAGGGGCAACAAACTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK63998.1	7.7e-136	uncharacterized protein A4U43_C07F21060
Swissprot	Q8GUH1.2	5.3e-105	Serine/threonine-protein kinase
trEMBL	A0A5P1EDP0	5.6e-136	RING-type E3 ubiquitin transferase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45910.1	55.80	2e-106	382		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g253628	AT2G45910.1	319	123	2	2	305	516	831	55.80	2e-106	382
g253628	AT5G51270.1	322	160	4	6	308	499	819	44.10	1e-77	286
g253628	AT3G49060.1	316	143	6	6	303	499	801	44.94	4e-76	281

Ortholog group

Species	Genes
Allium cepa	g253628.t1; g253629.t1; g461513.t1
Allium fistulosum	AfisC1G08337; AfisC1G08338; AfisC3G01230; AfisC3G01744; AfisC4G02043; AfisC4G02044; AfisC4G04743; AfisC5G04375; AfisC6G01775; AfisC6G01785; AfisC8G03354
Allium sativum	Asa0G03082.1; Asa2G04838.1
Arabidopsis thaliana	AT3G61410.1
Oryza sativa	LOC_Os03g31044.1; LOC_Os03g31044.2; LOC_Os03g31070.1; LOC_Os06g06760.1; LOC_Os06g06760.2; LOC_Os06g06760.3; LOC_Os09g39620.1; LOC_Os10g40060.1; LOC_Os10g40060.2; LOC_Os10g40060.3; LOC_Os10g40060.4; LOC_Os10g40100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	5	221	112.1	2.5e-32
PF04564.12	U-box	Domain	237	308	65.7	2.8e-18

Gene Ontology

Accession	Ontology	Name
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0006464	P	cellular protein modification process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016740	F	transferase activity
GO:0019538	P	protein metabolic process
GO:0019787	F	ubiquitin-like protein transferase activity
GO:0032446	P	protein modification by small protein conjugation
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0070647	P	protein modification by small protein conjugation or removal
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09553	STIP1; stress-induced-phosphoprotein 1	EC:-	-	-
K11838	USP7, UBP15; ubiquitin carboxyl-terminal hydrolase 7	EC:3.4.19.12	FoxO signaling pathway	ko04068

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network