result

Gene information

Detail information of g257211

Location

Gene	Chr	Start	End	Strand
g257211	Scaffold_58322:HRSCAF_441408	441007	445247	+

Sequences

CDS

Protein

Gene

>g257211.t1
ATGTGTCCACGGAGTACTCCGGGTACTTGCTATTTATGTATGTATGTTTAACAGAGTGGCGAAAGAAACGACACTGGAATTAAATTCAAAATGTGAGGTTTAAGCAAAAATTTTAGATATAGATATTGCTATTTGAAAACCCTGTGTAATAAAAAATATCACAACACTGCATGTTTATGGCCAGCTAACTCTTCTCAAAGTTAATCTTACGGATACAAACAGCTTGTGCTATGTTAGTTATACTGTTTTTTTCTTAATTAAAACTATCTGCTCTTTTCTCAAACTAATAAAACCTTTTTTAGACTAATGTCTGACTTCCCCTCCTGGTGGTAGAATCCAATGCACAATATATAGTACCATCAGTCCTAATATCAAATTTTATTTATATTTATTAATCTATATTAATGACCCAAACCAGTCCCAAACCAGTCGAATTGGTTTGCAGTACGAGTCTACGACACCAAGCTGGTCCCTTCCAATAAAAATTCAAAAGTAAGCAATATGTTCTGTCATGAGCTAAATATTTGCTTGTACATGATAGATGATCTTTACCTCTAGTGCTTGGCTTGCCTATTTAAATAATTCTTAATCAGGAGTTACATGCATTATTTGTTTTGACATAATGTTCTCCATAAATAGAAGCAATGGAATAATTCGGTGTACTGGTAGTTCCGCTGTCTCTGTAGTATTCACATTGTAGCTAAGTTTAGTAAGGCAGGTTTTTCAAGTGTATTGAACTCATATTTTTCAAATCTGGAAGCCGTCTATAAGCGTCGGATGTAAATCAGAAGGATATAATAAAATATGTGTGATCTTTAGTTGATTGAGATTGGTGATAATATATTGATTTGTTTAATGAGAAACATCGTTCTCCATAGATTTGATCAAGTACAAGTGTGGATTTATTTTGAAATATTTAAACTCTATCTATAATCATTCACCCTAACCACCCGGCAATATCATAATATTAGACTTTTAAGCCATATATTTGTTGCAGAACCATTATGCATACGTATTGGTATTGCCTACGATATTCAATGGTTTCATGACAAATAAGCTTACAGTTTAGAAGATAATATGTAGCTTAAACTTAATTTGGTAGTGAATTCCAGAAAGAAGGGAGAAAAAGATGGAGACTAACCATAACTGGCCTAGAAAATTAAATATCACCAGCAAACTATGGATATGATAATTTGATACCTTAATTGGTTAAACATTGAGATGAAAAAACTAGAGATAAAACATTTTGATAATAATAGGAAATGTGCTGGCATTATTGGAAATTTCTCTGATAGTAATCACTTTACTTGGGTCTTTATAAGAACTATTGGTAGGACAAGCTTCTCATGCCACATACCTTTTCTCTTTTAAAAGTTTATAGCAGTAACTGAAATATCTCCTCTCACTTCATTAAATCTCTTCCTAATATTTTGGTAACTTAAAAAGGAGGAATAATTAGCAATAGCTCTCAAACGTCATCGACAAGCAGCACTACTTTTATCAACATTTTTATCTCAGCTGAGGGAGATTTGAGCATAGAATTAAGACTACGACTTGGTCTATCCATTTCTTCCCTGCATAGTATAAACTACTTCAGATACAAGGTACGATCGTTATTATGGTATTTTGTTCAAAAGCTGTCTCTTTTTAAATTTGGTTTTGATTTTATGATGTAAGCTGTTCTCTCTACTGTGTTAATGATTTACTTATGTTTTCTCGTTTGTAATTTTTTTTCCTTTGTGCCATTATGAATATGAACATATGGAAATTTTGCTAGCTGATTCATAAAGGTTAAAATCCAATGTTATTGTGGTTTTCTTATTTATATTTATCTTGGTTTTTTATCTTCTTTATGTCCAAGTTCTTAAACAAATATACAATTTTATGATCTGACCCAATTTCCTTTAAATTGTAAGAGAATAACTATAATTGATTTATATCTTTTTGGTGTAGATGTTAATATTCTGAGTTGCTACTTCTGGCTTTAATTTCAGCTCCTTATGGTTCCTTCCTTTCTCAGTTATTCATTCTGTTATTTCTATTTTTTTTTGTTATTCCTTTAATTGTTGTTGATTGCTTCATGCTGCTTAGGGTGTAAATGGTTTATGTTACATGTGCGTAATGTATGTCTTGATCCCCTTTAACGCGATCCAATACGATCGGTTGGGCTGCTACCTTTAAATCCACCATTTTGCGCATTATTTTCACTAGGGCACTGTATCCATCTATTGGTATATACTAGGAGCACTACTAGGCTGGTCCATTGGCTTGTTGAGCAATCATTTGGAGGGCATAAAAAATTGAACAATGCGCATATTCGTAAACAAATTTAATGTTAGGATCAAGTTGCTACTGTTAAGGTGAAAATTTGCTATGTTGAACTGCACTTGCTAAACTTCTACTGTTGTGTGGATTTGCTACTTATTTAGTTATCTTCGTGTGATAAAAAATTTAGATTACTTTGGATGGTTCAGTGAACAAAAACATCGGTTAACTTTTGTCATAAACAAATGAACCATGGTTAACGTCGGTTAGTTTTGAATGCTTAGGTTGTTATAGACCACCGTTCTAAAGTATTTTAGAATCCAAACTTTATCAGTATTCACATACAACTGAAATTACTTTTCCTTGATGCATTGAAGATTAAAAGTAAATAATTTTTTGTTTAATGAAAAACATCAATCCCATTAAAGTTGATAAAGTACAGGTCTGGAATTGAATTACTTAAACTCCGTCTAAAATAATTCACTCTAACCACTGGGGAATATCATATTATCCCATTAAACTTTGATCCATGGTTGCATGACAAGTAAAGTTAATGTTGTGTGTACACACATACGTACATGTATACGTAATTATGAGTTTTTAGGCCAAGGGAAAAAATTGAAGAAAAATTTAGTTTCAGGGGCGAAAAGTTTGATTTTTTGGGGTGGAAAACAATTGTTAATGTACATCACAAAGTAGTAGTTGCAGCCATAATTTTTTGTTTACACCATGCAGTGTCATTCAAACTAAAAAACAAATCTGATGTTTTCGAGACTAATTTTTTTCGCAACTTCTCTCATGTGCATATTTTTCTGTACTTTTTTTCGAGAAGCGTTCAGTTATACCTCAAAGAGTACAACACCCCTGCAACTTCTTCATTTCCACCCAACAATCCGAATTAAAAAATTATGACTTCACTCTCTTTCCACTAGCCATATTATTTAATTCGGATTATGCGCCGTCGAGCGCTACACGCGCACGCATGCACGCACGCACATATATAACAGAAACCTCTGCCTCACTCTAATAAATCTTTTTTAATGTTTTAATAGACTAATGGGAGGAGAAATTAGTAGTTCTCCAACTTCTTCAACAGACAGTAGCATTCACCCGTGTGTTTCATCCACATGTGCACCTCAGGCAAAGAGCGATTTGAGCACAGATTTAAGGCTTGGCCTCAGTTTATCAACCTCTTCCTTCCATACTACTTCCTTGAGGTACGATTGTTTTTCATGGTATTCATAGTTCTACATATCTTTTCAAGTAAATCGATAAAATATCATGATTACATGTTCAATCAGGTTTATTTGAACTTTTTTGTCAATTTTTATATATGTTTTCTATCATTTTTGACAGTAAATCTCAAACACTTTCTAACTGGCCACCAATAAAATCTCTGCTTAGAAGCACAATTGAAGAGAAACGAACTGAAGGAAACCAAGAAACTTTCTATGTGAAAGTGTACATGGAAGGAATACCAATTGGAAGAAAAGTGGACCTATTTGCACATAATGACTATGATTCTCTTATCTCCACACTCTCTCTCATGTTCAGGACAACAATAATTTTGAGTAAGTAGTAAACTTCCTAACTTTCAAGTTTTTAAAGTTGTAAATAATTACTTATGTTATAACACATAAACTGCACTAATACCTTGAAATTTAATGAGTCTTTTTTTATCTATGAATCAGCACCTGAACATGCATCTTTGTCTTCAAGAAAGGTTCATTTATTAACGTATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGACGTGGATTGGGAGTAAGTAGTGTATTGCCCGCCACCCCCCCCCCCCCCCCCCCCCCAAACACACACACACACACATATATATATTGCTTAACTGATATTTCTTTATTATTTGACTTTAGAACGATAATTCTTCATACTTGAACAGATTTTTCTTAAGGAGTGTCAAAAGACTGATGATCCGATGGGCAGATAGATGCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255022.1	7.7e-53	auxin-responsive protein IAA4
Swissprot	A2WNM0.1	9.6e-32	Auxin-responsive protein IAA4
trEMBL	A0A5P1FPB2	5.6e-53	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G17600.1	49.28	2e-29	125	IAA31	indole-3-acetic acid inducible 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g257211	AT3G17600.1	138	61	4	87	222	27	157	49.28	2e-29	125
g257211	AT3G62100.1	138	71	1	80	217	30	166	47.83	2e-27	119
g257211	AT2G46990.1	151	79	2	74	221	23	172	45.03	8e-26	113

Ortholog group

Species	Genes
Allium cepa	g257211.t1
Allium fistulosum	AfisC4G01195
Allium sativum	Asa4G01092.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	97	217	104.9	5.3e-30

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009790	P	embryo development
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009605	P	response to external stimulus
GO:0009606	P	tropism
GO:0009628	P	response to abiotic stimulus
GO:0009629	P	response to gravity
GO:0009630	P	gravitropism
GO:0009642	P	response to light intensity
GO:0009646	P	response to absence of light
GO:0009647	P	skotomorphogenesis
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0009965	P	leaf morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010033	P	response to organic substance
GO:0010051	P	xylem and phloem pattern formation
GO:0010154	P	fruit development
GO:0010262	P	somatic embryogenesis
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048598	P	embryonic morphogenesis
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048825	P	cotyledon development
GO:0048826	P	cotyledon morphogenesis
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090698
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network