result

Gene information

Detail information of g259383

Location

Gene	Chr	Start	End	Strand
g259383	Scaffold_58610:HRSCAF_441696	1231558	1233354	-

Sequences

CDS

Protein

Gene

>g259383.t1
ATGGCTTCATCAGTAAATGAGGAAACTCCTAGCAACTCTACCGATTCTCCATCAATGTGAGTACTTTTTCTCTCAAATCCAATTTTTGTTTTGTTTTAGGGTTTCAATAAGTACTATTTTGAGCAAATTCTTATTGCAGATTGAAAAACAAATACAAGGATCCAGACGATGGGCGACAGAGGTTTTTGCTTGAGTTGGAATTCGTTCAGTGCTTGGCTAATCCAACTTATATTCATTGTGAGCATTCTCTTGATTCAGATTAGTTAAAAGCTTTGTGTTATCTTTCAAAAAATGTGTTTGTAACAGTGGATTGTAGAAATGGAGAAAGTTTCGTTCTTTGCCTGTAATTGTTCTTTTTATTCATAGTTTAACTCAACTTTTTAGTTCTAGAGAATAGTGTATTTGAATGAACACATGTTTGTCTTACTGAAATGAAACTTCAATTTCTTATTCAAACAGATCTGGCTCAAAACAGATATTTCGAAGATGAGGCTTTTATTGGATACTTAAAATATCTTCAGTACTGGAAGCAACCTGAGTATATTAAGTTTATAATGTAAGTGGTGTATCACTATTTAATTTAAAATATATTGTGCAAAAAGCTCTCAGTTTATTCAGAAATGAGCATCAAAAATCAATAATTTATTTTTGTTTATAGGTATCCACAATGTCTTTTCTTCCTGGATCTTTTGCAGAATGCAGACTTCCGAAATGCAATGGCACATCCTGGAAACAAGGTTTATATTCTTTGGTCATAATAATTTGGTGGTTAATTCAGTTATATAGTAATAATTTTTGCAGTCTGTCATAGTTCGTACCTTGCAAGTATGTCATTTTGGATATTTTCTTAGGTTGTTAGATAATATGATCACTTGTTGGTATTTTGTAGCTGTTATTTATACTCTTATCATAACGTAATATTTTAGCTAAGGACTAACTATATTTTATATGATATGAAGTTTCACTAAAAGAAAATATAAAGCGAAAAATAAATAAATTCTACATGCTTGTTACTAGATAATTCTGAATAAGAATGCTTATAATTCATCAATTTTAAGTAGAAAAATTAAAATCTAGATCTGACCGTGTTCTGAATAGTAATTTGCAATTTTATTAGTGTTATGAATCACAATTTTGCAGCATTGTCTTAACCGACTGAAACTTGACATCTCAATAATAATGCAATGACTTGATTCTGTTGCATTTTAACTTTAAGTTTCTTGTCAAGAAAGTGTCAAATTACATATCAAACATTTCGGTAGAAAAAGAAATCGCAAGTCAATAAGGAGATGGTTTTAGAAGTAATAACAACACATTACTAACTCGTTGCATTAGTTGTAAACGAAATTTAAGGTCTTAGTATCTATTGGCCTCACCATTTTCCCAATTTTATTGGTTGATGTGCTCTGTGTATTAATATTCATTCTTTGCTAGACAATTATAATATGACAATGCAACTTGTAGTGATTGTAACCTGTGAAATACGTGTAGGAATTGGCACATAGGCAACAGTACTTCTTCTGGAAAAACTACAGAAACAATAGATTAAAGCATATTTTACCACGGCCTCTACCTGAGCCAGAACCACCAGCTGCATCAGCGCCTCCTCCAGCAGCTCCAGTTTTGCCACCTGTCACTTCTGCACCAGTGCTTTCTCCGATGCAGCAGTTTGCCAGTCAGCCTGGATCTTCTTTTCCAAAAACTACTGATATGAGAAATGCCATGGGAGACCGCAGAAAGAGAAAGTATGTCTTTAATATTAGCATCAAGAGTTTCTTATTTTACATCGAAAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT42195.1	1.6e-55	hypothetical protein B296_00034439
Swissprot	Q8VYB1.1	4.6e-44	Mediator complex subunit SOH1
trEMBL	A0A426XS25	1.1e-55	Mediator of RNA polymerase II transcription subunit 31

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19910.1	63.82	1e-61	232	MED31	SOH1 family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g259383	AT5G19910.1	199	52	6	7	195	5	193	63.82	1e-61	232
g259383	AT5G19910.2	229	52	7	7	195	5	223	55.46	6e-57	216

Ortholog group

Species	Genes
Allium cepa	g259383.t1
Allium fistulosum	AfisC1G08243
Allium sativum	Asa7G06585.1
Arabidopsis thaliana	AT5G19910.1; AT5G19910.2
Oryza sativa	LOC_Os07g07020.1; LOC_Os07g07020.2; LOC_Os10g41450.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05669.9	Med31	Family	32	124	122.4	5e-36

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000428	C	DNA-directed RNA polymerase complex
GO:0003674	F	molecular_function
GO:0003712	F	transcription cofactor activity
GO:0003713	F	transcription coactivator activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005667	C	transcription factor complex
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0016591	C	DNA-directed RNA polymerase II, holoenzyme
GO:0016592	C	mediator complex
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030880	C	RNA polymerase complex
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032991	C	macromolecular complex
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044451	C	nucleoplasm part
GO:0044464	C	cell part
GO:0044798	C	nuclear transcription factor complex
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0055029	C	nuclear DNA-directed RNA polymerase complex
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061695	C	transferase complex, transferring phosphorus-containing groups
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0070847	C	core mediator complex
GO:0080090	P	regulation of primary metabolic process
GO:0090575	C	RNA polymerase II transcription factor complex
GO:1902494	C	catalytic complex
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:1990234	C	transferase complex
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15153	MED31, SOH1; mediator of RNA polymerase II transcription subunit 31	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network