result

Gene information

Detail information of g260019


Location
GeneChrStartEndStrand
g260019Scaffold_58689:HRSCAF_4417756207965736-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008789280.10.0e+00NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY59.13.5e-273NF-X1-type zinc finger protein NFXL1
trEMBLA0A8B8ZTZ10.0e+00NF-X1-type zinc finger protein NFXL1-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G10170.157.670.01136ATNFXL1;NFXL1NF-X-like 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag260019.t1
Allium fistulosumAfisC6G05219
Allium sativumAsa8G02071.1
Arabidopsis thalianaAT1G10170.1
Oryza sativaLOC_Os06g14190.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01422.14zf-NF-X1Family2412566.57.9
PF01422.14zf-NF-X1Family29431225.87.3e-06
PF01422.14zf-NF-X1Family35837517.90.0022
PF01422.14zf-NF-X1Family41643321.70.00014
PF01422.14zf-NF-X1Family4614726.48.8
PF01422.14zf-NF-X1Family50151821.60.00015
PF01422.14zf-NF-X1Family55857510.30.51
PF01422.14zf-NF-X1Family61162715.00.018
PF01422.14zf-NF-X1Family6456714.242

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982Ftranscription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001078Ftranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001227Ftranscriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0006952Pdefense response
GO:0042742Pdefense response to bacterium
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006082Porganic acid metabolic process
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009314Presponse to radiation
GO:0009636Presponse to toxic substance
GO:0009416Presponse to light stimulus
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009628Presponse to abiotic stimulus
GO:0009642Presponse to light intensity
GO:0009651Presponse to salt stress
GO:0009696Psalicylic acid metabolic process
GO:0009697Psalicylic acid biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010188Presponse to microbial phytotoxin
GO:0010310Pregulation of hydrogen peroxide metabolic process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0010817Pregulation of hormone levels
GO:0044212Ftranscription regulatory region DNA binding
GO:0016053Porganic acid biosynthetic process
GO:0016070PRNA metabolic process
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016999Pantibiotic metabolic process
GO:0017000Pantibiotic biosynthetic process
GO:0017144Pdrug metabolic process
GO:0018130Pheterocycle biosynthetic process
GO:0018958Pphenol-containing compound metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0019752Pcarboxylic acid metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032774PRNA biosynthetic process
GO:0032787Pmonocarboxylic acid metabolic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0042221Presponse to chemical
GO:0042445Phormone metabolic process
GO:0042446Phormone biosynthetic process
GO:0042537Pbenzene-containing compound metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043436Poxoacid metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044281Psmall molecule metabolic process
GO:0044283Psmall molecule biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046189Pphenol-containing compound biosynthetic process
GO:0046394Pcarboxylic acid biosynthetic process
GO:0046483Pheterocycle metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051193Pregulation of cofactor metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071704Porganic substance metabolic process
GO:0072330Pmonocarboxylic acid biosynthetic process
GO:2000377Pregulation of reactive oxygen species metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:0098542Pdefense response to other organism
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1901615Porganic hydroxy compound metabolic process
GO:1901617Porganic hydroxy compound biosynthetic process
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K12236NFX1; transcriptional repressor NF-X1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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