result

Gene information

Detail information of g260477

Location

Gene	Chr	Start	End	Strand
g260477	Scaffold_58772:HRSCAF_441858	359207	368051	-

Sequences

CDS

Protein

Gene

>g260477.t1
ATGGATCATGAACAAAACCAAGAAGACCGCTTACCCAAACCCGAACCCTCAACCTCTGACCCGGTCCGGTCCAGATGGACCCCCAAGCCCGAACAGATACAAATCCTGGAGAACATCTTCAACAGTGGGACAGTGAACCCTACAAAGGACGAAACGGTCAAGATTCGGAGAATCCTGGAACAGTATGGCTCGGTCGGGGATGCAAACGTCTTTTACTGGTTTCAGAAACCGTCGCTCCAGGTCAAGGAGAAGGCTCAGGCAGCTGCAGGCTGCGGCTGCGGCAGCTAATATGAACCCATATGATCAGATTGCTGCTGCTGGTGCTTCTAATTGTACTCCTTCTTCTTCTTCAAATAATTCTAATAATACGGGTTTGCTTCATGGTGCTTCTGCTAGTTCTCCTTGTGTTGATTCTGCATCGTTTGTTGATGGTTATGGTGAACATGATTGGTTTAGTAGTGTTCCTTGTGTTTATTCATCTGATTCCTCCCATTTACAGCTCAACCCTGGTAATTAATCATTTGTGTTTTCTAGTAATAGTTGGTTAGCATGCATGCATCATGATTTTTCTTATATATTAAAGAATAAATAAACAAAAGCTGCCAAAGCATGATTCTTTATGTTGGATCATGAATTTGAACACAACAAAAATCTTTGGTTGATTTATCTGAATTATATACAGTGGGATTAATACATATTATTTACTTTTGTGTTAATCGTAACAATGTTTCGATTTTACTGGTTTTCATTTTTTTTTTTTTAGTTCTCGTATAATAATAATATAAAAAATGGGAAAATAATGCATTAATTATAAGATTGTTACCTTGCTGCTGAAAAATGGATATATTTTCTGTTAGAAATATTTCCTATGCAAAAAAAATTTCTTCTTTATTCCATCTTATAGTTTTGAAGTGGAATCTTACTATTTTATTTTATTTGAAAATTATACATTTATTTAGTTGCATTTATATTAAACTAATTAAAGATAACTGCATATTAAGATCACATTTAGTGATCGATATGCAGAAGTTTCAGAGAAATCTAGAAAATAATTAGATATAACTGACTGAAAATATAATATTGAATATGCATGATTTGTGTTAGTTTTACTGTAGATGTTTGTTTTATCTGCATTCTAGTAATTACTTGCTACGGAATCAATAAGCATTAAGCATTTTTAACTTGATAGATAACTGTTTATGAATCATTAACAATAATTATTATCACACTTTGCGCACATGGTTGAAGTTTCCGGAAATTTTTGTACGATCTTATTTACCTCTATATTAAATTTGTATATCCTGAGAAATATACAGTAATTTTTATTTACATGAAAACTTTCTAAGATCTAAATAAAGACGCTTTATATTAGAATACAAAGTATAAAGCGCACAAGTAAATTAGGTTGTTTCCCAGAAATGACGATTAGCTGGTTGTCAATAATTACATACTCTCCTATTCTCTTCTTTAAATTAAATACATGCATAAATATAAAATCGAGCAAAATTAAGATATTATGCATGATGGTTTTTCTTATATATTAAGGAATAAAATGAACGAAAGTCTACCAGAGCATGATTCTGCTCTTGTTGGATCATGAATTTGAATCCAGCAAACATCTTTAGTTGATTTATCAGAATTATGTGTTGATACATATTTACTTTAGTGTTACCACCACCATGCTTTGATTTACAAATTATCTAAAAAAGAATTTTTAATCTTCATATGAGTATAAAAATAGCAGAACAATGCATTACTTGTAAGATTGTTAACTTACTGATTGAAAAAGGCTCTTTTTTTTCCTTTTCTTTTGTTAGAAATATTTATATTTCCTATGTATGAAATCTTTCTTGGTTTTTTCCATCTTAAAGTGTTGAAGTAGAACCTATTTATTTATTTTGTTAGACAAATATATTTATTTAGTCGTATGTATATTAAACTAATTAAGGGCAATTACTTATTAATATCACATCAATTAGTGATGAGTAGAAGTTTAGGCGAAATCTAATTGTTTTTTGGATATCTGACTGAAAATATAAATATTGAATATGCATGATTTGTTTTGGTTACTGTGGTCTGAATTCTATTTTTTACTTACTATGGAATCATTAAGCACAGCAAGCATTTTTCACTTGATGGATAACTGTTTATAAGTAATTAACAAATAATTATTATCACTATTTGCGCACATGATTGAAGTTTCCGGAAGTTTTGTACGATCATATAAACTTCTATATTAAGTTTGTATATTCTGAGAAATATACAGTAATTATTTTTTACAGGAAAGCTTTCTAAGATCTAAATAAAGATGCTTTATATTAGGACAAAAAGTATAAAGCGCACAAGTAAATTAGGTTGTTTCCCAGAAATGATGATTAGCTGGTTGTCATTAATTACGTACTATAATATCTTCTTTGAATGCATACACAGATCAAAAATGTCGCAAATAAGATATTATGGAATAAATATATTTATTCATAATCAATACACAACAGTTCTTAAGTACGTATGAGAAAATTTAATTGTAATTACTGTCTAATACTTAAATTGTATAATGTATTCCACTATATCTATCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATGTGAGTGGTGGATAGTTAAACTGTTCTTGAAACACCTCAAATGGTAGCCAATCCATCAAAAGCATTAAGAAGTCAAATAAAACATAAACTAATAAAGGTGTGAATGCAATGTTTGATTTTAGTAGGCTGTTTTAGATTTTCAACAGAGCATTGAATTGAAGCTTGATATGCTATATAACCGTGATGAACCTTTGTTATCTAGTAAACTTGAAGTTTTCAAGAAAAGACCTAGATATACACAGTTATTGAAATTAAATGATATGATTAAACGTGTGCAAACCCACTTTATCCAACATCATACAACAAAATGCCAATTAAGTGGATACTTTGCTGATTTGCTCTGTGGATTGTTTGTATTATTTTTATTGATACATGTATATACTGGTGTTGTAGGGACAATAACTGTCTTTATAAATGGAATGCCAACAGAAGTTCCAAGAGGAGCCGTAGATATGAGAGCAATGTTCGGTCCAGATGTGGTGCTAGTACACTCTTCCGGTGAGGTTCTTCCAGCTAATGAATACGGAGTTTTAATCCAGAGCTTGCAAATGGGGGAGAGCTACTTTCTGGTACGTCTTTTGCTCCCTTGCTCGCTGAGCATGGATCATTGGTAGTATAATCTTGTCTTGTCATACCATCCCAAACGGATAGAGCATAGAATCCATGTCATGACATTATTATATGATGATGGATTTTCTAGAATACTTTCACGCAACATTTTTAAGATAATTAATGATCCTAATTAATTAATTGTTGTCTAGAGATTCAGGTTAATAAAAACCTTAAAAGGGACTTTTCGTTCCTTTCCTCAAAGATTTTCAAAAGAAGTATGTCAATACTTTGAAAATTACTTTTAAAATTACACTTAATTTGTATTATGAAGCTCATTCAAACAATTAGAACATTTATCATGCCCGCCTACCCTGCCTCCATTAAAATATACTTCGGGATGTGGGCAAACTATGGATTAGCTTACAACCGTTCACACGTTATTGGAGTTTACCAGCAAAGCTTCGTTTTCTGCATCTTCATAAAAAAGGGGTAAAATAAAACATCAAATCGACAAAAAAATTAAACTTAATGTAGTTAGCATTTCATTTCATAAAATCATGAAACATGCGAAAAATCAACATGCAATACCACTACTTTCCATTTCTATCTCCATTCAGTTAACGTTTCATTTCAATATCGTATTAAATTCTAACATGTATGAGGGAAAGTTCTTGAACATCATCATGACTATCATGACTATCACGAAATTCACTTACTCGTTTCAAAAGTACAATTGAGGATGTTAGGGTTATTGAACTTTTCCAACTTTGGCTCCTCTGTTAAGGGTGAAGTCAAACATCCAGATGGAATTGTGTTCATTTATGTCACCATGACAACATGAATACGAACACTCATTTATAAGGATTTTGTTGTTTACAAGCAGTAGAAACAATTCTTTATTGTCTTGTCAATACTTGAGAATACTGTTAATAATCATCCAGCATTGTCAACATAGCATATAAGATAGATATTATTGTTGATGCATAATGAATCCTTCTCATATGCTATTTCTCCTCGTTCTTTAAACAGAGTACATTTTAGAAAGGATAATTTCGTCTCATATTAAAACATTTCTTTGCTTTGAATTTTCCGTACTGTCTTTTTAGTCTAGGGTTTTACATACAAAGATTGGGATAATTCAAACGTCCTACTTAATCTACCTATACAGATCTTGGTATCTAGTATACATGATGCATATCCAAAGTTCTTCATCGATAATCTTGTAGACAGTCTTCTTTTAAGTAATTTAACATAAATATATCATTACCAATCAGTGACAAATCGTATGCACACTATATAGGAAACATTATAGTACCTTACTCTTCCTACTTTTAGGCACATGCGTCCTCTTTATTTTGATTCTAATCTAACTATTTGATTACCTACTTACTCCAACTTTTAGATGTTTGATAAAGACTACGGATTGATCTTAAGTGTCCATAAGATTTATCATAGCACTCATTGGCTTCGAAATTTTTTGTTGTTGTACATACACCTTTTTTGTCAATCGTTATCTAAAAAGGTCGTTTTATTATCTTTTTGTCATATCTTAGTCATAGTATGTGTTGATTTCAAGTTGAATCTGAATGGATGTAAGCATGGCGATTGACAAAAAACTCCCTCTACAAAATATTTGGAATTTGAAAAAATTCTTTTCCTATCAATCCTACGTTATAAGTCTACACTTTTCCATTTTCACTAATATTCTTCCTGAAGATTCGTCGGTGAGTACATCCAATTAGGTGCATCTTTCAAAGTCCAAATTTTGTTTGTGCATATGCAATTCATTTTGGAATTCATAGCATCAAGCCATAGGGAGGAGTTTTTATTCTCCATTACCTAGTAGCTGACTCCACAATTACCATGAATAAAAATAAAAATATGCGGTGGTTCAGTTTTAAAAAACAAAGAATAAAAATATTGTCAAAAATAAAAATAGGGATATGATTTAAAACTTGTTTATAAGGAGGGTTTTTCGTGTATTAAACTTGAAAATGAGGGATGGATCTAAATTTCTAATGGTTATAAAAGCTTGTGAATTTATGTATCTAATTCTATCATTCTAAATATTTATTATACACATTTTTGTTCAATATTCAAAATCTAAACTTATCAACAATTATGCATTGAGATTACATGCAACAAATATTGAAGAAGCTGTATAAGTAGCATCGTTCTATTGGCGTGCAGTACGAAGAGATGTGAAGGAGTTGCGTAAGTTGATCATTATTTCGGGTGTGGTGTGCATTGTATAAGTAATTGTATAGATCAAACAAGCAAAGTTCCACATCACGAGTTAAGTGGAATTAAACATTATGTTATATGTGCTTGATGAATGACCGGGAGATCTCCAATCATGTTGCGTGCATCTAATGTGGATTTATGCTTAAAAAGCATCATGGACTAATCTTGATTGCAAGAACCACAGTTTGATAGAGTTGTGTTGATCCACATTAAATGATGTGTGCATATGGATGTTGGTCTTCGTGGAGTGGTAGAACTTTATAGAGTGGTATTACTTACTCTATAGTGAGTGAATCATGCATATAGATGAGGGCGCACATGGTAGGGGTGCCAAAACACAACATGGTATCAATGTTTATGGTTCAAGGAAAGTTGTATGTAAAATATCAAAGGTATTTATATATAGCCGAGTTTTTTCTAGGATTCCTATACAATTAGATTTTAAAAGAGACAAGAAATGAAGATAACACAATGACAAATAGATTACTCCAAAAAAATATTTATTAATTCACCAAATGATTATAAGAAAAAGCCAAAAAATTAAAAAGAAATCTCAATCCCCAAAACTCCAGAAAAAATAAACTTTTTTCCGCATCCATCAAATGAAATCTATAAATGTGTATTTACAACTGTCTCATAAAATATCTTCTTCAAGAAGTTGTTGGTTACTTCCATCTTTTAAAATAAATCATTTCCACATAGAATTTCCTGCCTTCCTTAACGCAATAAAAGATGCAACCAATATTCTTTAATCATTCTACAAAATCGACAAAATCTATAAGCAAAGCAATATATTTGAGTCATAATACACATTGTGACATACACCTTAACTCACAATATCTTCAAAATCTACTTTGATTTCGAAATATTGTATCGCAAAATCTAACATTGTAGATTAAGATCATTAACCTTGAATCAAATGTATCTTTATCATTCTTTTGAGACATGTACTAATAAAATCGAGGGCGAAGTTTTTTACTTTGTAAGAACGGAAAAGTGAACAAAAAATTGTACTTAAAGTTTGTTATAAAGTTTCATTTGCATTTTATATATAAACAATATTTTCGCTCCCATCTTTCATTCATCTTAATCCTATTCTTCTAAAGTTACTTGCATTAGTAATAGAACAAGGGGAATAAGAAAATTATCAGCCTTTGCTTTTAGTCATTCGTTTTCACCAAAAAAAAAATTATGTATAATGAGGTGATAAAATTAAAGAAGAATTGATCTAAAAGATTACGATAGATGTTGAGAATGACTACAATAAATATGGAGAAATGATGCAAATGGAAAAGAAAGCATTTGCAAGTTTGCAATGAAAAATAAAAAAACCCCACGGCATAAAAAAAAAAAAAAAAAAAATTTAGTTGCACCAATAAGAAAGTGGAAAAAAAATAGAGCAACGACATGATTTAAGAAGTCGTGAAGGAAAAGACAAGAAGAAGATAATGAGGAGGATAAAGTTGTAAAAGGGACGCAAAATATTAAAGAGGTGCAAAAGATAAATTTAAAGAGGTGAAGTTTGATGTACCTTCAATATATGTAAAGCAGAAAAATATTGTTGAAATGGGTATAAAACCACATTGTCCTTTAACCTTGAACCCTAAGAGATAATTTCAAGGATTTAAAGAAGTATCATAAGACTTTGCTCTCGTTCATAAATGTTCCGATGAAGTGAAAACAGTCGTAAAGGTCAAAGAGGTGGGAGACAAAGATGAAATAAAGGAATGAGAATGCAAAATGAATTTGTTTTACATTTCATGGTAATTTCCATGCGTTAGACGAGAATATAACAAGAATTGTCACAATAGAAAATATAATGAAACAGAAAGTAAAGTAGGCACAATTCTTAATATTGACAAACTTAAAAATTCGACGTTTGATTTAAAAATGAAACAATAGGAAATAAAACATATGAAACAACAAAAAAAGTTAAGTAAAGATTTTATTATTCATGTTTCTGAAAACTTTATTTTTGAGTCAATGATTGTTGAAAAAAGCGTAATTTGAAAACTTTGTTAAAATAACTTATAAGATAGTTCAAAAGTTATGAGAGTGGAACAAAGTGGATATTATAATGTTTGCGTTTTCAAAAACTCTATAAATTAAGAAAATGAGAAATTAAAATAATGATTCATGGGTACTATTTAGTATTTCAATATTATGTAAGAAGGTCGACAAAATCAAGAAAGTCTTTTCTATTCTTTCCAAAGCATGTAAAGCACAAAGATTGTATGTTTAACTTTGAGTTAAAAAAATAAGGCTACGAGAGATGCTACAAATTATTCTTATTTTTTTCCTAGACTTTAACTAAAATTTAGGGTAGAACAATTAAGTTTCTTTTAATGGACTAAATCATTAAGGAAAAAGAGATATTTAAAAATATATAATCATGGTAGGAAGTTGTCTTGAGTTCTCTTATATAGAATTATGAGAAGTCAAATGTAGAATATATCTTGGATATGTTTTGGGGTATTCATGGATTATCGATAAAATATTTCAAAAGATTTTTGTAGAGAATCATAGGATTTTTTTTGTAAAATTTCTAACATGGTTATAAAGAGTTCTAAAGTAAGATTATTAATAATGGATGAAATGTATCTCATTCATTTAGGAGGTGCATAAGTATAAGGAGTGAGATTTTTTCTTCTTCCAAGCACCGAAATGCATGAAAAAATACTAACCGAACTTCGTCGTAAGTTTTCATCTTCTCTTTATAAATAAACACTAATTTTCATTTCTCATCCATCTTGTTCTAAAAAATTTAACAATGTTTCTTACAAACAACATAGAAATTAATCAATTCCATTTCTCTACGAAAAATATTGATAAATATTTTCACTAATGAATGAATTCTCCCTTGCACTAACAATTTATGTTGAACAAATTTCAATATTCTTTCCATGATCAATGACCTAGCACCACTTAGGAAAAGAATAAATTGATTGAATAGTGTATTTTTATTTTTCCTTATTTTTTATGTTATCAAAATGTATCATGATCCATTGATCCAAATTTACTGTCGGGAATTATGATTTACAAATAGTTAAATCTTAACAACATATTGCCCCTTGTAGAATTTCATACAAGTTGATAAGATTTAGCACCTCACATCTTCCCAGTTACATTTCAAAATTTTATTGATAGTCCACATAAATGTTCAAGGAGGTATAACTCTGAATCCATGCCAGGTATATTATATGTACATCAGTATTTGTAAATTTCTTATTGTTTTTATTCACGTGCACAGCTTACATCAAATATTTTAAGCTACATACATCACATAATTATTCATGTTGGGCTATAAAAATGATATCATATTTTTGCTCATGGCAAAAAGTAATCATCTTTAAATCATATAACAATATTATACCTTTGTTACAGGTTTTGAAATCTTCCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_030925492.1	1.9e-43	WUSCHEL-related homeobox 11-like isoform X1
Swissprot	B8B644.1	4.0e-38	WUSCHEL-related homeobox 11
trEMBL	A0A7N2M3V7	1.4e-43	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G03660.1	40.00	4e-43	171	WOX11	WUSCHEL related homeobox 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g260477	AT3G03660.1	265	111	6	1	218	1	264	40.00	4e-43	171
g260477	AT5G17810.2	70	24	0	6	75	2	71	65.71	1e-24	109
g260477	AT5G17810.1	70	24	0	6	75	2	71	65.71	1e-24	109

Ortholog group

Species	Genes
Allium cepa	g260477.t1
Allium fistulosum	AfisC5G00961
Allium sativum
Arabidopsis thaliana	AT3G03660.1; AT3G03660.2; AT5G17810.1; AT5G17810.2
Oryza sativa	LOC_Os07g48560.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	23	73	30.3	2.5e-07

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0010015	P	root morphogenesis
GO:0010101	P	post-embryonic root morphogenesis
GO:0010102	P	lateral root morphogenesis
GO:0010311	P	lateral root formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048527	P	lateral root development
GO:0048528	P	post-embryonic root development
GO:0048731	P	system development
GO:0048830	P	adventitious root development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18490	OTX2; homeobox protein OTX2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network