result

Gene information

Detail information of g260547


Location
GeneChrStartEndStrand
g260547Scaffold_58784:HRSCAF_441870197006197602-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAEG75669.12.5e-34CCAAT-box binding factor HAP3-like protein
SwissprotQ84W66.21.4e-34Protein LEAFY COTYLEDON 1-LIKE
trEMBLA0A835UQL11.0e-34CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G47670.154.174e-39 157L1L;NF-YB6nuclear factor Y, subunit B6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag109454.t1; g109456.t1; g250325.t1; g260546.t1; g260547.t1; g260548.t1; g260552.t1; g371567.t1; g371803.t1
Allium fistulosumAfisC1G04939; AfisC1G04942; AfisC1G04943; AfisC1G04944; AfisC1G04946; AfisC1G04949; AfisC1G04953; AfisC1G05059; AfisC3G05230
Allium sativumAsa2G04224.1; Asa4G02840.1
Arabidopsis thalianaAT5G47670.1; AT5G47670.2
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00808.20CBFD_NFYB_HMFDomain16482.22.2e-23

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0001101Presponse to acid chemical
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009738Pabscisic acid-activated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032870Pcellular response to hormone stimulus
GO:0033613Factivating transcription factor binding
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071215Pcellular response to abscisic acid stimulus
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0080090Pregulation of primary metabolic process
GO:0097305Presponse to alcohol
GO:0097306Pcellular response to alcohol
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08065NFYB, HAP3; nuclear transcription Y subunit betaEC:- Antigen processing and presentationko04612

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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