result

Gene information

Detail information of g263828

Location

Gene	Chr	Start	End	Strand
g263828	Scaffold_59227:HRSCAF_442313	72298	74529	-

Sequences

CDS

Protein

Gene

>g263828.t1
ATGATGCAATTTTCGGAGAACACGGCACAATCGCCATATCCACTCATTCCACCTTCAACCAATATTATACATCTCCCTTCTTCCAAATCCCTTACAAGTACCACCTCCTCGTTGAGCTCAACATCGTGCATGGAACAACTCCTCGTGCACTGTGCACACGCCGTGGACCGAAATGACTCAACCCTCGCTCATCAGATACTATGGGTCCTCAACACCATAGCTCCACCAGATGGGGACTCGACCCAACGGCTCACGTCTGCATTCCTCCGATCGCTTGTGTCACGTGCTTCCAAGCTAGGGTCGTGTCAACTCTCCCCTTTGTCCCCTATCAACCTACACAAGTTCTCCCTTCTAGAGCTTGCTTCCTTTGTTGACCTCACTCCTTACCACCGATTTGGTTATACTGCTTCAAATGCTTCCATCCTTGATGCGATTGAAGGTTTCCCTTTTGTGCATATCGTGGACTTCTCCACGACGCATTGTATGCAGATTCCTACTCTAATTGATGCGCTAGCAAATCGGGTGGAAGGTATGTTGGAATCATTGCACTTTCACGCATTCTGAAATTAATATGAGAAGAGAAGATTTTGCTCATCGAAAAATCAAAGAAAAGTATATTTTTAGTGTTACTATGTTTAGACTATGGTTAAATTGAAAATTTATATGTAAATCAAAGGTGTTAAACATATAGTTTGCAATTACAGATTGTCAAGAAATACATTTAAAAATGATAGTTTGTCTTGAAACTTGTGCATCTTTGAAATATATATAAGAGCACGTTGGAGATTCAGGGCTTAATGTATCTCCAGACATGGTGTGGTTGAAAAGTAATATGTCTATGGGGTAAAATATCTACTCGTATATGAATGATCACATTAAGATAAATTCCACTTTCGGGTTTAATTTCATTATCTAAGTGAAATTTTGAGAGAAAATAGAGAAGATATAGCGATAGCTCTATAGTAAAAACTTTGTTAGAAAAATATTTCTCATTAGCTTTTGCATTGAACGTTGGAAAACAATTGTAATATCTTATTTTGAAAAGGGAAAAAAAAAACTATAAATTTAGGTCTCCAATTTCAGCACTGATATATATAGTAATTTATTCTGGTTAACGTCTTCACATATTTCTCTTCAATGACTAGTTTATTATTGATTATTAATAAGAATGAATAATTTTTTGTGTAAATTTTAGAGTGCATAGCAATGCTCATTTGTTGTGTTCTGACAATTGGCTAAATCTAAATTTCATATATAAATCAATAGTTCTGTTGTAGCAGGTCATTCTATGTGATATCTCCATATATTTCTCTTTTATGTCTAGTTTTTAACGAGTAATATTAAGAATGAATAAATTTTCATGTAAATATTGGAATGAATAGCAACTCTCTTTTATATATGGATACGGCTAACTTGAGTTTTTCTATATAAATCGAGAACCTTGTTGTAGCGGCTCATTCTACTTGATATCTTCATATTTTCTCTTCTAAGTCTTGTTTTTATTTCTTTGTAGGCCCACCATTGGTGAGGATCACCGTCCCAATTACGTCTATACCACCAATGCTGGCCATCTCCTACGATGAGTTGGGGTCACGACTAGTCAACTTCGCAAGGTCACGCAACGTCATGATGGAATTCAGGGTAGTTCCTTCAAGCCCTAACAACGGTTTCGAAACCCTAATCGAGGAACTTAGGGTTCAAAGACTAGTTTCCGAGGGAGAGGCCCTAGTGATCAATTGCCAAATGCTATTGCACTACATCCCTCTATCAATCCGTTCGATGTTCTTGAAAAACGTAAGAGGTCTTGAACCGACCATAGTGACACTAGTTGACGAGGACACAGACTTCACAGATACCGACGTGGTGGGGAGATTGAGGTCGGCGTTCAACTACTTATGGATACCCTATGATGCAGTTGAGGGATTTTTGCCTAGAGGGAGTGAGAGAAGGAGGTGGTACGAGGAGGAGATAGGATGGAAGATAGAGAATGTGATAGGGTGTGAAGGGGTGGGGAGAGTGGAGAAGTCGGAAAAGAGAGGGAGGTGGGGAAGTAGGATGAGGGAGGTAGGGTTTAGAGGGGTTGGATTTGGAGAGGAAGGGGTGGCCGAAGTGAAGGGTATGTTGGATGAACATGCCGCTGGATGGGGGTTGAAAAAGGAGGAGGATTTGGATTTGGTTTTGACTTGGAAAGGTCATAATGTTGTCTTTGCTTCTTCATGGGTGCCTACATGA

Functional annotation

Database	accession number	e-value	annotation
nr	OAY75991.1	4.8e-157	Scarecrow-like protein 32
Swissprot	Q9SN22.1	5.7e-123	GRAS family protein 18
trEMBL	A0A199VGJ3	3.5e-157	Scarecrow-like protein 32

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G49950.1	56.34	6e-129	457		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g263828	AT3G49950.1	410	155	8	21	414	8	409	56.34	6e-129	457
g263828	AT5G67411.1	203	77	4	162	353	1	202	56.16	1e-58	223
g263828	AT4G37650.1	416	260	11	26	415	122	531	29.81	2e-45	180

Ortholog group

Species	Genes
Allium cepa	g263828.t1
Allium fistulosum	AfisC5G00573
Allium sativum	Asa6G06579.1
Arabidopsis thaliana	AT3G49950.1
Oryza sativa	LOC_Os07g40020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	45	412	291.6	7e-87

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network