result

Gene information

Detail information of g264309

Location

Gene	Chr	Start	End	Strand
g264309	CHR2	352827568	352828398	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK77689.1	3.8e-12	uncharacterized protein A4U43_C02F9500
Swissprot	Q9SWF9.1	6.3e-12	Zinc finger CCCH domain-containing protein ZFN-like
trEMBL	A0A5P1FL63	2.7e-12	Zinc finger CCCH domain-containing protein 43

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16540.1	47.75	7e-26	113	ZFN3	zinc finger nuclease 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g264309	AT5G16540.1	111	54	2	14	123	240	347	47.75	7e-26	113
g264309	AT5G16540.1	82	43	1	12	92	82	163	46.34	6e-18	87.0
g264309	AT5G16540.1	86	53	0	7	92	32	117	38.37	4e-15	77.4

Ortholog group

Species	Genes
Allium cepa	g264308.t1; g264309.t1; g295110.t1; g295111.t1; g295113.t1
Allium fistulosum	AfisC2G01789; AfisC5G03733
Allium sativum	Asa5G01524.1; Asa6G03907.1
Arabidopsis thaliana	AT1G48195.1
Oryza sativa	LOC_Os12g18120.1; LOC_Os12g18120.2; LOC_Os12g18120.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	19	44	27.3	2.1e-06
PF00642.21	zf-CCCH	Family	64	88	26.2	4.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0003824	F	catalytic activity
GO:0004518	F	nuclease activity
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006417	P	regulation of translation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010313	F	phytochrome binding
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010608	P	posttranscriptional regulation of gene expression
GO:0010629	P	negative regulation of gene expression
GO:0016787	F	hydrolase activity
GO:0016788	F	hydrolase activity, acting on ester bonds
GO:0017148	P	negative regulation of translation
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032269	P	negative regulation of cellular protein metabolic process
GO:0034248	P	regulation of cellular amide metabolic process
GO:0034249	P	negative regulation of cellular amide metabolic process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0043170	P	macromolecule metabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048027	F	mRNA 5'-UTR binding
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051248	P	negative regulation of protein metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network